* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘dtametaTMB’ ... ** this is package ‘dtametaTMB’ version ‘0.1.2’ ** package ‘dtametaTMB’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-16 (Debian 16.2.0-1) 16.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp2Erw1W/R.INSTALL819fc75513df6/dtametaTMB/src' g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/TMB/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c init_dummy_file.cpp -o init_dummy_file.o (cd TMB; /home/hornik/tmp/R.check/r-patched-gcc/Work/build/bin/Rscript \ --no-save --no-restore compile.R '') Note: Using Makevars in /home/hornik/.R/Makevars-gcc using C++ compiler: ‘g++-16 (Debian 16.2.0-1) 16.2.0’ make[2]: Entering directory '/home/hornik/tmp/scratch/Rtmp2Erw1W/R.INSTALL819fc75513df6/dtametaTMB/src/TMB' g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/TMB/include" -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_dtametaTMB_TMBExports -DCPPAD_FRAMEWORK -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/TMB/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c dtametaTMB_TMBExports.cpp -o dtametaTMB_TMBExports.o In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/TMB/include/cppad/local/ad_fun.hpp:602, from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/TMB/include/cppad/cppad.hpp:86, from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/TMB/include/TMB.hpp:125, from dtametaTMB_TMBExports.cpp:4: /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/TMB/include/cppad/local/optimize.hpp: In function ‘CppAD::addr_t CppAD::optimize::binary_match(const CppAD::vector&, size_t, size_t, const Base*, const CppAD::vector&, short unsigned int&) [with Base = CppAD::AD]’: /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/TMB/include/cppad/local/optimize.hpp:782:25: warning: ‘new_arg’ may be used uninitialized [-Wmaybe-uninitialized] 782 | code = hash_code( | ~~~~~~~~~^ 783 | op , | ~~~~~~~~~~~~~~~~~~~~~ 784 | new_arg , | ~~~~~~~~~~~~~~~~~~~~~ 785 | npar , | ~~~~~~~~~~~~~~~~~~~~~ 786 | par | ~~~ 787 | ); | ~ In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/TMB/include/cppad/local/recorder.hpp:14, from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/TMB/include/cppad/local/ad.hpp:22, from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/TMB/include/cppad/cppad.hpp:78: /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/TMB/include/cppad/local/hash_code.hpp:125:16: note: by argument 2 of type ‘const CppAD::addr_t*’ {aka ‘const unsigned int*’} to ‘short unsigned int CppAD::hash_code(OpCode, const addr_t*, size_t, const Base*) [with Base = AD]’ declared here 125 | unsigned short hash_code( | ^~~~~~~~~ /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/TMB/include/cppad/local/optimize.hpp:715:23: note: ‘new_arg’ declared here 715 | addr_t new_arg[2]; | ^~~~~~~ /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/TMB/include/cppad/local/optimize.hpp: In function ‘CppAD::addr_t CppAD::optimize::binary_match(const CppAD::vector&, size_t, size_t, const Base*, const CppAD::vector&, short unsigned int&) [with Base = double]’: /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/TMB/include/cppad/local/optimize.hpp:782:25: warning: ‘new_arg’ may be used uninitialized [-Wmaybe-uninitialized] 782 | code = hash_code( | ~~~~~~~~~^ 783 | op , | ~~~~~~~~~~~~~~~~~~~~~ 784 | new_arg , | ~~~~~~~~~~~~~~~~~~~~~ 785 | npar , | ~~~~~~~~~~~~~~~~~~~~~ 786 | par | ~~~ 787 | ); | ~ /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/TMB/include/cppad/local/hash_code.hpp:125:16: note: by argument 2 of type ‘const CppAD::addr_t*’ {aka ‘const unsigned int*’} to ‘short unsigned int CppAD::hash_code(OpCode, const addr_t*, size_t, const Base*) [with Base = double]’ declared here 125 | unsigned short hash_code( | ^~~~~~~~~ /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/TMB/include/cppad/local/optimize.hpp:715:23: note: ‘new_arg’ declared here 715 | addr_t new_arg[2]; | ^~~~~~~ g++-16 -std=gnu++20 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o dtametaTMB_TMBExports.so dtametaTMB_TMBExports.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR make[2]: Leaving directory '/home/hornik/tmp/scratch/Rtmp2Erw1W/R.INSTALL819fc75513df6/dtametaTMB/src/TMB' make[2]: Entering directory '/home/hornik/tmp/scratch/Rtmp2Erw1W/R.INSTALL819fc75513df6/dtametaTMB/src/TMB' make[2]: Leaving directory '/home/hornik/tmp/scratch/Rtmp2Erw1W/R.INSTALL819fc75513df6/dtametaTMB/src/TMB' [1] TRUE g++-16 -std=gnu++20 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o dtametaTMB.so init_dummy_file.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp2Erw1W/R.INSTALL819fc75513df6/dtametaTMB/src' make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp2Erw1W/R.INSTALL819fc75513df6/dtametaTMB/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp2Erw1W/R.INSTALL819fc75513df6/dtametaTMB/src' installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-dtametaTMB/00new/dtametaTMB/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘dtametaTMB’ finding HTML links ... done FENO html RF html anaemia html anova.dtametaTMB html anticcp html as_revman.dtametaTMB html coef.dtametaTMB html diabetes html dtametaTMB html fitHoyer html fitHoyerAFT html fitReitsma html fitReitsmaLCA html fitReitsmaSubgroup html fitReitsmaSubgroupLCA html fitRutterGatsonis html fitRutterGatsonisLCA html fitRutterGatsonisReg html fitRutterGatsonisSubgroup html fitRutterGatsonisSubgroupLCA html forest.HoyerAFT html forest html forest.Reitsma html forest.ReitsmaLCA html forest.ReitsmaSubgroup html forest.ReitsmaSubgroupLCA html forest.RutterGatsonis html forest.RutterGatsonisLCA html forest.RutterGatsonisSubgroup html forest.RutterGatsonisSubgroupLCA html initHoyerAFT html logLik.dtametaTMB html pap html plot.HoyerAFT html plot.Reitsma html plot.ReitsmaLCA html plot.ReitsmaSubgroup html plot.ReitsmaSubgroupLCA html plot.RutterGatsonis html plot.RutterGatsonisLCA html plot.RutterGatsonisSubgroup html plot.RutterGatsonisSubgroupLCA html print.HoyerAFT html print.Reitsma html print.ReitsmaLCA html print.ReitsmaSubgroup html print.ReitsmaSubgroupLCA html print.RutterGatsonis html print.RutterGatsonisLCA html print.RutterGatsonisReg html print.RutterGatsonisSubgroup html print.RutterGatsonisSubgroupLCA html restructure_data html schuetz html summary.HoyerAFT html summary.Reitsma html summary.ReitsmaLCA html summary.ReitsmaSubgroup html summary.ReitsmaSubgroupLCA html summary.RutterGatsonis html summary.RutterGatsonisLCA html summary.RutterGatsonisReg html summary.RutterGatsonisSubgroup html summary.RutterGatsonisSubgroupLCA html tub html vcov.dtametaTMB html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dtametaTMB)