* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘dowser’ ...
** package ‘dowser’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘dowser’
    finding HTML links ... done
    BiopsyTrees                             html  
    ExampleAirr                             html  
    ExampleClones                           html  
    ExampleDbChangeo                        html  
    ExampleMixedClones                      html  
    ExampleMixedDb                          html  
    IsotypeTrees                            html  
    TimeTrees                               html  
    airrClone-class                         html  
    bootstrapTrees                          html  
    buildClonalGermline                     html  
    buildGermline                           html  
    buildIgphyml                            html  
    buildPML                                html  
    buildPhylo                              html  
    buildPratchet                           html  
    buildRAxML                              html  
    calcRF                                  html  
    collapseNodes                           html  
    colorTrees                              html  
    condenseTrees                           html  
    correlationTest                         html  
    finding level-2 HTML links ... done

    createGermlines                         html  
    downsampleClone                         html  
    dowser-package                          html  
    dowser                                  html  
    findSwitches                            html  
    formatClones                            html  
    getBootstraps                           html  
    getDivergence                           html  
    getGermline                             html  
    getNodeSeq                              html  
    getPalette                              html  
    getSeq                                  html  
    getSubTaxa                              html  
    getSubclones                            html  
    getTrees                                html  
    makeAirrClone                           html  
    makeModelFile                           html  
    maskCodons                              html  
    maskSequences                           html  
    plotTrees                               html  
    readFasta                               html  
    readIMGT                                html  
    readLineages                            html  
    readModelFile                           html  
    reconIgPhyML                            html  
    rerootTree                              html  
    resolveLightChains                      html  
    resolvePolytomies                       html  
    runCorrelationTest                      html  
    scaleBranches                           html  
    stitchRegions                           html  
    stitchVDJ                               html  
    testPS                                  html  
    testSC                                  html  
    testSP                                  html  
    treesToPDF                              html  
    writeLineageFile                        html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* creating tarball
packaged installation of ‘dowser’ as ‘dowser_2.2.0_R_x86_64-pc-linux-gnu.tar.gz’
* DONE (dowser)