* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘dowser’ ...
** this is package ‘dowser’ version ‘2.5.1’
** package ‘dowser’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘dowser’
    finding HTML links ... done
    BiopsyTrees                             html  
    ExampleAirr                             html  
    ExampleAirrTyCHE                        html  
    ExampleClones                           html  
    ExampleDbChangeo                        html  
    ExampleMixedClones                      html  
    ExampleMixedDb                          html  
    IsotypeTrees                            html  
    TimeTrees                               html  
    airrClone-class                         html  
    bootstrapTrees                          html  
    buildAllClonalGermlines                 html  
    buildBeast                              html  
    buildClonalGermline                     html  
    buildGermline                           html  
    buildIgphyml                            html  
    buildPML                                html  
    buildPhylo                              html  
    buildPratchet                           html  
    buildRAxML                              html  
    calcRF                                  html  
    checkDivergence                         html  
    checkNodeDivergences                    html  
    collapseNodes                           html  
    colorTrees                              html  
    condenseTrees                           html  
    correlationTest                         html  
    createAllGermlines                      html  
    createGermlines                         html  
    create_MRCA_prior_germline              html  
    create_MRCA_prior_observed              html  
    create_alignment                        html  
    create_height_prior                     html  
    create_max_height_prior                 html  
    create_root_freqs                       html  
    create_starting_tree                    html  
    create_traitset                         html  
    dfToFasta                               html  
    downsampleClone                         html  
    dowser-package                          html  
    dowser                                  html  
    dowserObjectEquivalent                  html  
    exportTrees                             html  
    filterCombs                             html  
    filterPartialSeqs                       html  
    findSwitches                            html  
    formatClones                            html  
    getAllSeqs                              html  
    getBootstraps                           html  
    getDiffPoint                            html  
    getDiffPoints                           html  
    getDivergence                           html  
    getGermline                             html  
    getHeightsAndLengths                    html  
    getNodeSeq                              html  
    getPalette                              html  
    getSeq                                  html  
    getSeqPath                              html  
    getSkylines                             html  
    getSubTaxa                              html  
    getSubclones                            html  
    getTimeTrees                            html  
    getTimeTreesIterate                     html  
    getTrees                                html  
    getTreesAndUCAs                         html  
    installPythonDependencies               html  
    makeAirrClone                           html  
    makeModelFile                           html  
    makeSkyline                             html  
    mapSubtrees                             html  
    maskCodons                              html  
    maskSequences                           html  
    plotMSA                                 html  
    plotSkylines                            html  
    plotTrees                               html  
    readBEAST                               html  
    readFasta                               html  
    readIMGT                                html  
    readLineages                            html  
    readModelFile                           html  
    readTreesJSON                           html  
    reconIgPhyML                            html  
    rerootTree                              html  
    resolveLightChains                      html  
    resolvePolytomies                       html  
    runCorrelationTest                      html  
    sampleCloneMultiGroup                   html  
    sampleClones                            html  
    scaleBranches                           html  
    setNodeDivergences                      html  
    stitchRegions                           html  
    stitchVDJ                               html  
    stopCodonCheck                          html  
    testPS                                  html  
    testSC                                  html  
    testSP                                  html  
    treesEquivalent                         html  
    treesToPDF                              html  
    writeCloneSequences                     html  
    writeFasta                              html  
    writeLineageFile                        html  
    writeTreesJSON                          html  
    write_clone_to_xml                      html  
    write_clones_to_xmls                    html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (dowser)