* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘distcomp’ ...
** package ‘distcomp’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-23) 13.2.0’
make[1]: Entering directory '/tmp/Rtmpc7jEJU/R.INSTALLed5d14e85500f/distcomp/src'
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c chinv2.c -o chinv2.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c cholesky2.c -o cholesky2.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c chsolve2.c -o chsolve2.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c coxcount1.c -o coxcount1.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c coxfit6.c -o coxfit6.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c coxmart.c -o coxmart.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c dmatrix.c -o dmatrix.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c init.c -o init.o
gcc-13 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o distcomp.so chinv2.o cholesky2.o chsolve2.o coxcount1.o coxfit6.o coxmart.o dmatrix.o init.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmpc7jEJU/R.INSTALLed5d14e85500f/distcomp/src'
make[1]: Entering directory '/tmp/Rtmpc7jEJU/R.INSTALLed5d14e85500f/distcomp/src'
make[1]: Leaving directory '/tmp/Rtmpc7jEJU/R.INSTALLed5d14e85500f/distcomp/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-distcomp/00new/distcomp/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘distcomp’
    finding HTML links ... done
    CoxMaster                               html  
    CoxWorker                               html  
    HEMaster                                html  
    HEQueryCountMaster                      html  
    HEQueryCountWorker                      html  
    NCP                                     html  
    QueryCountMaster                        html  
    QueryCountWorker                        html  
    SVDMaster                               html  
    SVDWorker                               html  
    availableComputations                   html  
    availableDataSources                    html  
    createHEWorkerInstance                  html  
    createNCPInstance                       html  
    createWorkerInstance                    html  
    dccoxph                                 html  
    defineNewComputation                    html  
    destroyInstanceObject                   html  
    distcomp-internal                       html  
    distcomp                                html  
    distcompSetup                           html  
    executeHEMethod                         html  
    executeMethod                           html  
    generateId                              html  
    getComputationInfo                      html  
    getConfig                               html  
    makeDefinition                          html  
    makeHEMaster                            html  
    makeMaster                              html  
    makeNCP                                 html  
    makeWorker                              html  
    resetComputationInfo                    html  
    runDistcompApp                          html  
    saveNewComputation                      html  
    saveNewNCP                              html  
    setComputationInfo                      html  
    setupMaster                             html  
    setupWorker                             html  
    uploadNewComputation                    html  
    uploadNewNCP                            html  
    writeCode                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (distcomp)