* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘dipsaus’ ...
** package ‘dipsaus’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-24) 13.2.0’
make[1]: Entering directory '/tmp/RtmpI3bmhw/R.INSTALL17d5f11bd88ab6/dipsaus/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c forelse.cpp -o forelse.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_arrayShift.cpp -o rcpp_arrayShift.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_baselineArray.cpp -o rcpp_baselineArray.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_collapse.cpp -o rcpp_collapse.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_fastCov.cpp -o rcpp_fastCov.o
rcpp_fastCov.cpp: In member function ‘virtual void FastCov::operator()(std::size_t, std::size_t)’:
rcpp_fastCov.cpp:47:24: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
47 | for(jj = begin; jj < end; jj++, pt_cm2++){
| ~~~^~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_median.cpp -o rcpp_median.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c utils.cpp -o utils.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o dipsaus.so RcppExports.o forelse.o rcpp_arrayShift.o rcpp_baselineArray.o rcpp_collapse.o rcpp_fastCov.o rcpp_median.o utils.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpI3bmhw/R.INSTALL17d5f11bd88ab6/dipsaus/src'
make[1]: Entering directory '/tmp/RtmpI3bmhw/R.INSTALL17d5f11bd88ab6/dipsaus/src'
make[1]: Leaving directory '/tmp/RtmpI3bmhw/R.INSTALL17d5f11bd88ab6/dipsaus/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-dipsaus/00new/dipsaus/libs
** R
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘dipsaus’
finding HTML links ... done
AbstractMap html
AbstractQueue html
PersistContainer html
actionButtonStyled html
add_to_session html
as_pipe html
ask_or_default html
ask_yesno html
async html
async_expr html
async_flapply html
async_works html
attached_packages html
base64-url html
base64_to_image html
base64_to_string html
baseline_array html
capture_expr html
cat2 html
check_installed_packages html
clear_env html
col2hexStr html
collapse html
compoundInput2 html
decorate_function html
deparse_svec html
dipsaus-defunct html
dipsaus-rstudio-shortcuts html
do_aggregate html
do_nothing html
drop_nulls html
eval_dirty html
fancyFileInput html
fastcov2 html
fastmap2 html
fastquantile html
fastqueue2 html
flex_div html
forelse html
getInputBinding html
get_credential html
get_dots html
get_ip html
get_os html
get_ram html
grapes-OF-grapes html
grapes-equals-greater-than-grapes html
grapes-help-set-grapes html
grapes-plus-grapes html
grapes-set-help-grapes html
graphic-devices html
handler_dipsaus_progress html
html_asis html
html_class html
iapply html
lapply_async2 html
lapply_callr html
list_to_fastmap2 html
list_to_fastqueue2 html
lock html
make_forked_clusters html
map html
mask_function2 html
match_calls html
mean_se html
mem_limit2 html
new_function2 html
no_op html
package_installed html
parse_svec html
print_directory_tree html
progress2 html
reexports html
registerInputBinding html
restart_session html
rs_active_project html
rs_avail html
rs_edit_file html
rs_exec html
rs_focus_console html
rs_save_all html
rs_select_path html
rs_set_repos html
rs_viewer html
screenshot html
session_uuid html
set_shiny_input html
sexp_type2 html
shared_finalizer html
shift_array html
shiny_alert2 html
shiny_is_running html
ste_mean html
sumsquared html
sync_shiny_inputs html
test_farg html
time_delta html
to_datauri html
to_ram_size html
updateActionButtonStyled html
updateCompoundInput2 html
update_fastmap2 html
use_shiny_dipsaus html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* creating tarball
packaged installation of ‘dipsaus’ as ‘dipsaus_0.2.8_R_x86_64-pc-linux-gnu.tar.gz’
* DONE (dipsaus)