* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘diagFDR’ ...
** this is package ‘diagFDR’ version ‘0.1.1’
** package ‘diagFDR’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘diagFDR’
    finding HTML links ... done
    add_pseudo_pvalues_to_list              html  
    as_dfdr_tbl                             html  
    choose_low_conf                         html  
    compete_max_score                       html  
    dfdr_bh_diagnostics                     html  
    dfdr_bh_elasticity                      html  
    dfdr_curve_stability                    html  
    dfdr_elasticity                         html  
    dfdr_equal_chance_qbands                html  
    dfdr_headline                           html  
    dfdr_local_tail                         html  
    dfdr_p_calibration                      html  
    dfdr_pep_decoy_sanity                   html  
    dfdr_pep_reliability                    html  
    dfdr_pep_reliability_tdc                html  
    dfdr_pi0_storey                         html  
    dfdr_plot_bh_elasticity                 html  
    dfdr_plot_cv                            html  
    dfdr_plot_dalpha                        html  
    dfdr_plot_dwin                          html  
    dfdr_plot_elasticity                    html  
    dfdr_plot_equal_chance                  html  
    dfdr_plot_fdrhat_pi0                    html  
    dfdr_plot_p_calibration                 html  
    dfdr_plot_p_calibration2                html  
    dfdr_plot_p_density_by_decoy            html  
    dfdr_plot_pep_density_by_decoy          html  
    dfdr_plot_pep_reliability               html  
    dfdr_plot_pep_reliability_tdc           html  
    dfdr_plot_pi0                           html  
    dfdr_plot_scope_disagreement_matrix     html  
    dfdr_plot_score_distributions           html  
    dfdr_render_report                      html  
    dfdr_run_all                            html  
    dfdr_run_jaccard                        html  
    dfdr_safe_filename                      html  
    dfdr_scope_disagreement                 html  
    dfdr_summary_headline                   html  
    dfdr_sumpep                             html  
    dfdr_write_manifest                     html  
    dfdr_write_readme                       html  
    dfdr_write_report                       html  
    diann_detect_run_col                    html  
    diann_global_minrunq                    html  
    diann_global_precursor                  html  
    diann_require_cols                      html  
    diann_runxprecursor                     html  
    dot-bh_threshold                        html  
    dot-check_has_cols                      html  
    dot-get_strata_df                       html  
    dot-jaccard                             html  
    dot-make_stratum_id                     html  
    dot-safe_df                             html  
    flag_headline                           html  
    jaccard_vec                             html  
    mokapot_competed_universe               html  
    mokapot_is_target_to_logical            html  
    mzid_parse_psms                         html  
    mzid_score_direction                    html  
    mzid_to_internal_score                  html  
    print.dfdr_tbl                          html  
    read_dfdr_maxquant_msms                 html  
    read_dfdr_mzid                          html  
    read_diann_parquet                      html  
    read_mokapot_psms                       html  
    read_spectronaut                        html  
    read_spectronaut_efficient              html  
    safe_max                                html  
    safe_mean                               html  
    safe_min                                html  
    score_to_pvalue                         html  
    spectronaut_detect_run_col              html  
    spectronaut_parse_decoy                 html  
    spectronaut_recompute_q_from_score      html  
    spectronaut_require_cols                html  
    spectronaut_runxprecursor               html  
    tdc_qvalues                             html  
    validate_dfdr_tbl                       html  
    wilson_ci                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (diagFDR)