* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘diagFDR’ ...
** this is package ‘diagFDR’ version ‘0.1.0’
** package ‘diagFDR’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘diagFDR’
finding HTML links ... done
add_pseudo_pvalues_to_list html
as_dfdr_tbl html
choose_low_conf html
compete_max_score html
dfdr_bh_diagnostics html
dfdr_bh_elasticity html
dfdr_curve_stability html
dfdr_elasticity html
dfdr_equal_chance_qbands html
dfdr_headline html
dfdr_local_tail html
dfdr_p_calibration html
dfdr_pep_decoy_sanity html
dfdr_pep_reliability html
dfdr_pep_reliability_tdc html
dfdr_pi0_storey html
dfdr_plot_bh_elasticity html
dfdr_plot_cv html
dfdr_plot_dalpha html
dfdr_plot_dwin html
dfdr_plot_elasticity html
dfdr_plot_equal_chance html
dfdr_plot_fdrhat_pi0 html
dfdr_plot_p_calibration html
dfdr_plot_p_calibration2 html
dfdr_plot_p_density_by_decoy html
dfdr_plot_pep_density_by_decoy html
dfdr_plot_pep_reliability html
dfdr_plot_pep_reliability_tdc html
dfdr_plot_pi0 html
dfdr_plot_scope_disagreement_matrix html
dfdr_plot_score_distributions html
dfdr_render_report html
dfdr_run_all html
dfdr_run_jaccard html
dfdr_safe_filename html
dfdr_scope_disagreement html
dfdr_summary_headline html
dfdr_sumpep html
dfdr_write_manifest html
dfdr_write_readme html
dfdr_write_report html
diann_detect_run_col html
diann_global_minrunq html
diann_global_precursor html
diann_require_cols html
diann_runxprecursor html
dot-bh_threshold html
dot-check_has_cols html
dot-get_strata_df html
dot-jaccard html
dot-make_stratum_id html
dot-safe_df html
flag_headline html
jaccard_vec html
mokapot_competed_universe html
mokapot_is_target_to_logical html
mzid_parse_psms html
mzid_score_direction html
mzid_to_internal_score html
print.dfdr_tbl html
read_dfdr_maxquant_msms html
read_dfdr_mzid html
read_diann_parquet html
read_mokapot_psms html
read_spectronaut html
read_spectronaut_efficient html
safe_max html
safe_mean html
safe_min html
score_to_pvalue html
spectronaut_detect_run_col html
spectronaut_parse_decoy html
spectronaut_recompute_q_from_score html
spectronaut_require_cols html
spectronaut_runxprecursor html
tdc_qvalues html
validate_dfdr_tbl html
wilson_ci html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (diagFDR)