* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘deform’ ... ** this is package ‘deform’ version ‘1.0.0’ ** package ‘deform’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.3.0-8) 14.3.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpkXPOGA/R.INSTALL152921403dc248/deform/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c bvn.cpp -o bvn.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c cnorm.cpp -o cnorm.o cnorm.cpp: In function ‘double cnorml(arma::vec, arma::vec, arma::vec)’: cnorm.cpp:22:24: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] 22 | if (arma::is_finite(y)) { | ~~~~~~~~~~~~~~~^~~ In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo:518, from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57, from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:32, from cnorm.cpp:2: /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here 167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr) | ^~~~~~~~~ cnorm.cpp:42:23: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] 42 | if (!arma::is_finite(nllh)) { | ~~~~~~~~~~~~~~~^~~~~~ /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here 167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr) | ^~~~~~~~~ cnorm.cpp: In function ‘double cnormr(arma::vec, arma::vec, arma::vec)’: cnorm.cpp:65:24: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] 65 | if (arma::is_finite(y)) { | ~~~~~~~~~~~~~~~^~~ /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here 167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr) | ^~~~~~~~~ cnorm.cpp:83:23: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] 83 | if (!arma::is_finite(nllh)) { | ~~~~~~~~~~~~~~~^~~~~~ /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here 167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr) | ^~~~~~~~~ cnorm.cpp: In function ‘double cnormlr(arma::vec, arma::vec, arma::vec, arma::vec)’: cnorm.cpp:106:24: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] 106 | if (arma::is_finite(y)) { | ~~~~~~~~~~~~~~~^~~ /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here 167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr) | ^~~~~~~~~ cnorm.cpp:136:23: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] 136 | if (!arma::is_finite(nllh)) { | ~~~~~~~~~~~~~~~^~~~~~ /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here 167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr) | ^~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c coscovfn.cpp -o coscovfn.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c covfn.cpp -o covfn.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c dampedcosfn.cpp -o dampedcosfn.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c pred.cpp -o pred.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c tnorm.cpp -o tnorm.o tnorm.cpp: In function ‘double tnormr(arma::vec, arma::vec, arma::vec)’: tnorm.cpp:32:21: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] 32 | if (!arma::is_finite(nllh)) { | ~~~~~~~~~~~~~~~^~~~~~ In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo:518, from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57, from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:32, from tnorm.cpp:2: /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here 167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr) | ^~~~~~~~~ tnorm.cpp: In function ‘double tnorml(arma::vec, arma::vec, arma::vec)’: tnorm.cpp:65:23: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] 65 | if (!arma::is_finite(nllh)) { | ~~~~~~~~~~~~~~~^~~~~~ /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here 167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr) | ^~~~~~~~~ tnorm.cpp: In function ‘double tnormlr(arma::vec, arma::vec, arma::vec, arma::vec)’: tnorm.cpp:100:23: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] 100 | if (!arma::is_finite(nllh)) { | ~~~~~~~~~~~~~~~^~~~~~ /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here 167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr) | ^~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c unitcoscovfn.cpp -o unitcoscovfn.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c unitcovfn.cpp -o unitcovfn.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o deform.so RcppExports.o bvn.o cnorm.o coscovfn.o covfn.o dampedcosfn.o pred.o tnorm.o unitcoscovfn.o unitcovfn.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpkXPOGA/R.INSTALL152921403dc248/deform/src' make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpkXPOGA/R.INSTALL152921403dc248/deform/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpkXPOGA/R.INSTALL152921403dc248/deform/src' installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-deform/00new/deform/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘deform’ finding HTML links ... done aniso html cencov html deform html expand html plot.deform html predict.deform html simulate.deform html solar html variogram html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (deform)