* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘deepSTRAPP’ ...
** this is package ‘deepSTRAPP’ version ‘1.0.0’
** package ‘deepSTRAPP’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.3.0-12) 14.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpx2pmvQ/R.INSTALL19d0d4716f36d9/deepSTRAPP/src'
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c deepSTRAPP_init.c -o deepSTRAPP_init.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c treetraverse.c -o treetraverse.o
gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o deepSTRAPP.so deepSTRAPP_init.o treetraverse.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpx2pmvQ/R.INSTALL19d0d4716f36d9/deepSTRAPP/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpx2pmvQ/R.INSTALL19d0d4716f36d9/deepSTRAPP/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpx2pmvQ/R.INSTALL19d0d4716f36d9/deepSTRAPP/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-deepSTRAPP/00new/deepSTRAPP/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘deepSTRAPP’
    finding HTML links ... done
    BAMM_template_diversification           html  
    BSM_to_phytools_simmap                  html  
    Ponerinae_binary_range_table            html  
    Ponerinae_biogeo_data_old_calib         html  
    Ponerinae_cat_2lvl_data_old_calib       html  
    Ponerinae_cat_3lvl_data_old_calib       html  
    Ponerinae_trait_cont_tip_data_10My      html  
    Ponerinae_trait_tip_data                html  
    Ponerinae_tree                          html  
    Ponerinae_tree_old_calib                html  
    compute_STRAPP_test_for_focal_time      html  
    cut_contMap_for_focal_time              html  
    cut_densityMap_for_focal_time           html  
    cut_densityMaps_for_focal_time          html  
    cut_phylo_for_focal_time                html  
    eel_biogeo_data                         html  
    eel_cat_3lvl_data                       html  
    extract_diversification_data_melted_df_for_focal_time
                                            html  
    extract_most_likely_ranges_from_densityMaps_for_focal_time
                                            html  
    extract_most_likely_states_from_densityMaps_for_focal_time
                                            html  
    extract_most_likely_trait_values_for_focal_time
                                            html  
    extract_most_likely_trait_values_from_contMap_for_focal_time
                                            html  
    is_dev_version                          html  
    mammals                                 html  
    plot_BAMM_rates                         html  
    plot_STRAPP_pvalues_over_time           html  
    plot_contMap                            html  
    plot_densityMaps_overlay                html  
    plot_histogram_STRAPP_test_for_focal_time
                                            html  
    plot_histograms_STRAPP_tests_over_time
                                            html  
    plot_rates_through_time                 html  
    plot_rates_vs_trait_data_for_focal_time
                                            html  
    plot_rates_vs_trait_data_over_time      html  
    plot_traits_vs_rates_on_phylogeny_for_focal_time
                                            html  
    plot_traits_vs_rates_on_phylogeny_over_time
                                            html  
    prepare_diversification_data            html  
    prepare_trait_data                      html  
    run_deepSTRAPP_for_focal_time           html  
    run_deepSTRAPP_over_time                html  
    select_best_model_from_BioGeoBEARS      html  
    select_best_trait_model_from_geiger     html  
    update_rates_and_regimes_for_focal_time
                                            html  
    whale_BAMM_object                       html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (deepSTRAPP)