* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘decon’ ...
** package ‘decon’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’
using Fortran compiler: ‘GNU Fortran (Debian 13.2.0-13) 13.2.0’
make[1]: Entering directory '/tmp/RtmpjxqK5Q/R.INSTALL20aaa06e55a394/decon/src'
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Ckernel.c -o Ckernel.o
Ckernel.c:614:21: warning: ‘A2’ defined but not used [-Wunused-const-variable=]
614 | static const double A2 = 1.0;
| ^~
Ckernel.c:612:21: warning: ‘B2’ defined but not used [-Wunused-const-variable=]
612 | static const double B2 = 5.77350269189625764507e-01;
| ^~
Ckernel.c:604:21: warning: ‘A3’ defined but not used [-Wunused-const-variable=]
604 | static const double A3[] = {
| ^~
Ckernel.c:600:21: warning: ‘B3’ defined but not used [-Wunused-const-variable=]
600 | static const double B3[] = {
| ^~
Ckernel.c:593:21: warning: ‘A4’ defined but not used [-Wunused-const-variable=]
593 | static const double A4[] = {
| ^~
Ckernel.c:589:21: warning: ‘B4’ defined but not used [-Wunused-const-variable=]
589 | static const double B4[] = {
| ^~
Ckernel.c:581:21: warning: ‘A5’ defined but not used [-Wunused-const-variable=]
581 | static const double A5[] = {
| ^~
Ckernel.c:576:21: warning: ‘B5’ defined but not used [-Wunused-const-variable=]
576 | static const double B5[] = {
| ^~
Ckernel.c:568:21: warning: ‘A6’ defined but not used [-Wunused-const-variable=]
568 | static const double A6[] = {
| ^~
Ckernel.c:563:21: warning: ‘B6’ defined but not used [-Wunused-const-variable=]
563 | static const double B6[] = {
| ^~
Ckernel.c:555:21: warning: ‘A7’ defined but not used [-Wunused-const-variable=]
555 | static const double A7[] = {
| ^~
Ckernel.c:550:21: warning: ‘B7’ defined but not used [-Wunused-const-variable=]
550 | static const double B7[] = {
| ^~
Ckernel.c:543:21: warning: ‘A8’ defined but not used [-Wunused-const-variable=]
543 | static const double A8[] = {
| ^~
Ckernel.c:538:21: warning: ‘B8’ defined but not used [-Wunused-const-variable=]
538 | static const double B8[] = {
| ^~
Ckernel.c:529:21: warning: ‘A9’ defined but not used [-Wunused-const-variable=]
529 | static const double A9[] = {
| ^~
Ckernel.c:523:21: warning: ‘B9’ defined but not used [-Wunused-const-variable=]
523 | static const double B9[] = {
| ^~
Ckernel.c:514:21: warning: ‘A10’ defined but not used [-Wunused-const-variable=]
514 | static const double A10[] = {
| ^~~
Ckernel.c:508:21: warning: ‘B10’ defined but not used [-Wunused-const-variable=]
508 | static const double B10[] = {
| ^~~
Ckernel.c:499:21: warning: ‘A12’ defined but not used [-Wunused-const-variable=]
499 | static const double A12[] = {
| ^~~
Ckernel.c:493:21: warning: ‘B12’ defined but not used [-Wunused-const-variable=]
493 | static const double B12[] = {
| ^~~
Ckernel.c:483:21: warning: ‘A14’ defined but not used [-Wunused-const-variable=]
483 | static const double A14[] = {
| ^~~
Ckernel.c:476:21: warning: ‘B14’ defined but not used [-Wunused-const-variable=]
476 | static const double B14[] = {
| ^~~
Ckernel.c:466:21: warning: ‘A16’ defined but not used [-Wunused-const-variable=]
466 | static const double A16[] = {
| ^~~
Ckernel.c:459:21: warning: ‘B16’ defined but not used [-Wunused-const-variable=]
459 | static const double B16[] = {
| ^~~
Ckernel.c:448:21: warning: ‘A20’ defined but not used [-Wunused-const-variable=]
448 | static const double A20[] = {
| ^~~
Ckernel.c:440:21: warning: ‘B20’ defined but not used [-Wunused-const-variable=]
440 | static const double B20[] = {
| ^~~
Ckernel.c:428:21: warning: ‘A24’ defined but not used [-Wunused-const-variable=]
428 | static const double A24[] = {
| ^~~
Ckernel.c:419:21: warning: ‘B24’ defined but not used [-Wunused-const-variable=]
419 | static const double B24[] = {
| ^~~
Ckernel.c:406:21: warning: ‘A28’ defined but not used [-Wunused-const-variable=]
406 | static const double A28[] = {
| ^~~
Ckernel.c:396:21: warning: ‘B28’ defined but not used [-Wunused-const-variable=]
396 | static const double B28[] = {
| ^~~
Ckernel.c:382:21: warning: ‘A32’ defined but not used [-Wunused-const-variable=]
382 | static const double A32[] = {
| ^~~
Ckernel.c:371:21: warning: ‘B32’ defined but not used [-Wunused-const-variable=]
371 | static const double B32[] = {
| ^~~
Ckernel.c:355:21: warning: ‘A40’ defined but not used [-Wunused-const-variable=]
355 | static const double A40[] = {
| ^~~
Ckernel.c:342:21: warning: ‘B40’ defined but not used [-Wunused-const-variable=]
342 | static const double B40[] = {
| ^~~
Ckernel.c:324:21: warning: ‘A48’ defined but not used [-Wunused-const-variable=]
324 | static const double A48[] = {
| ^~~
Ckernel.c:309:21: warning: ‘B48’ defined but not used [-Wunused-const-variable=]
309 | static const double B48[] = {
| ^~~
Ckernel.c:289:21: warning: ‘A56’ defined but not used [-Wunused-const-variable=]
289 | static const double A56[] = {
| ^~~
Ckernel.c:272:21: warning: ‘B56’ defined but not used [-Wunused-const-variable=]
272 | static const double B56[] = {
| ^~~
Ckernel.c:250:21: warning: ‘A64’ defined but not used [-Wunused-const-variable=]
250 | static const double A64[] = {
| ^~~
Ckernel.c:231:21: warning: ‘B64’ defined but not used [-Wunused-const-variable=]
231 | static const double B64[] = {
| ^~~
Ckernel.c:203:21: warning: ‘A82’ defined but not used [-Wunused-const-variable=]
203 | static const double A82[] = {
| ^~~
Ckernel.c:179:21: warning: ‘B82’ defined but not used [-Wunused-const-variable=]
179 | static const double B82[] = {
| ^~~
Ckernel.c:149:21: warning: ‘A96’ defined but not used [-Wunused-const-variable=]
149 | static const double A96[] = {
| ^~~
Ckernel.c:122:21: warning: ‘B96’ defined but not used [-Wunused-const-variable=]
122 | static const double B96[] = {
| ^~~
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c Fkernel.f -o Fkernel.o
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Fkernel.f:39:72:
39 | 3 FT(J) = ZERO
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 3 at (1)
Fkernel.f:76:72:
76 | IF (JHI + 1 - NFT2) 21, 23, 20
| 1
Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1)
Fkernel.f:93:72:
93 | 25 IF (SMOOTH(J) .LT. ZERO) SMOOTH(J) = ZERO
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 25 at (1)
Fkernel.f:133:72:
133 | 3 FT(J) = ZERO
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 3 at (1)
Fkernel.f:169:72:
169 | IF (JHI + 1 - NFT2) 21, 23, 20
| 1
Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1)
Fkernel.f:186:72:
186 | 25 IF (SMOOTH(J) .LT. ZERO) SMOOTH(J) = ZERO
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 25 at (1)
Fkernel.f:228:72:
228 | 3 FT(J) = ZERO
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 3 at (1)
Fkernel.f:264:72:
264 | IF (JHI + 1 - NFT2) 21, 23, 20
| 1
Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1)
Fkernel.f:281:72:
281 | 25 IF (SMOOTH(J) .LT. ZERO) SMOOTH(J) = ZERO
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 25 at (1)
Fkernel.f:306:8:
306 | * TWO/2.0/, FOUR/4.0/, PI,TWOPI/3.141592654,6.283185307/
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
Fkernel.f:408:8:
408 | * TWO/2.0/, FOUR/4.0/, PI,TWOPI/3.141592654,6.283185307/
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
Fkernel.f:495:72:
495 | 4 ximag(k) = -ximag(k)
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 4 at (1)
Fkernel.f:581:72:
581 | 16 ximag(k) = -ximag(k)
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 16 at (1)
Fkernel.f:619:72:
619 | 5 l(k) = ii
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 5 at (1)
Fkernel.f:629:72:
629 | do 9 j2 = j1, l2, l1
| 1
Warning: Fortran 2018 deleted feature: Shared DO termination label 9 at (1)
Fkernel.f:630:72:
630 | do 9 j3 = j2, l3, l2
| 1
Warning: Fortran 2018 deleted feature: Shared DO termination label 9 at (1)
Fkernel.f:631:72:
631 | do 9 j4 = j3, l4, l3
| 1
Warning: Fortran 2018 deleted feature: Shared DO termination label 9 at (1)
Fkernel.f:632:72:
632 | do 9 j5 = j4, l5, l4
| 1
Warning: Fortran 2018 deleted feature: Shared DO termination label 9 at (1)
Fkernel.f:633:72:
633 | do 9 j6 = j5, l6, l5
| 1
Warning: Fortran 2018 deleted feature: Shared DO termination label 9 at (1)
Fkernel.f:634:72:
634 | do 9 j7 = j6, l7, l6
| 1
Warning: Fortran 2018 deleted feature: Shared DO termination label 9 at (1)
Fkernel.f:635:72:
635 | do 9 j8 = j7, l8, l7
| 1
Warning: Fortran 2018 deleted feature: Shared DO termination label 9 at (1)
Fkernel.f:636:72:
636 | do 9 j9 = j8, l9, l8
| 1
Warning: Fortran 2018 deleted feature: Shared DO termination label 9 at (1)
Fkernel.f:637:72:
637 | do 9 j10 = j9, l10, l9
| 1
Warning: Fortran 2018 deleted feature: Shared DO termination label 9 at (1)
Fkernel.f:638:72:
638 | do 9 j11 = j10, l11, l10
| 1
Warning: Fortran 2018 deleted feature: Shared DO termination label 9 at (1)
Fkernel.f:639:72:
639 | do 9 j12 = j11, l12, l11
| 1
Warning: Fortran 2018 deleted feature: Shared DO termination label 9 at (1)
Fkernel.f:640:72:
640 | do 9 j13 = j12, l13, l12
| 1
Warning: Fortran 2018 deleted feature: Shared DO termination label 9 at (1)
Fkernel.f:641:72:
641 | do 9 j14 = j13, l14, l13
| 1
Warning: Fortran 2018 deleted feature: Shared DO termination label 9 at (1)
Fkernel.f:642:72:
642 | do 9 j15 = j14, l15, l14
| 1
Warning: Fortran 2018 deleted feature: Shared DO termination label 9 at (1)
Fkernel.f:643:72:
643 | do 9 j16 = j15, l16, l15
| 1
Warning: Fortran 2018 deleted feature: Shared DO termination label 9 at (1)
Fkernel.f:644:72:
644 | do 9 j17 = j16, l17, l16
| 1
Warning: Fortran 2018 deleted feature: Shared DO termination label 9 at (1)
Fkernel.f:645:72:
645 | do 9 j18 = j17, l18, l17
| 1
Warning: Fortran 2018 deleted feature: Shared DO termination label 9 at (1)
Fkernel.f:646:72:
646 | do 9 j19 = j18, l19, l18
| 1
Warning: Fortran 2018 deleted feature: Shared DO termination label 9 at (1)
Fkernel.f:648:72:
648 | do 9 i = 1, 2
| 1
Warning: Fortran 2018 deleted feature: Shared DO termination label 9 at (1)
Fkernel.f:58:5:
58 | 10 JHI = SQRT(BIG / FAC1)
| 1
Warning: Label 10 at (1) defined but not used [-Wunused-label]
Fkernel.f:29:5:
29 | 2 STEP = (DHI - DLO) / FLOAT(NFT)
| 1
Warning: Label 2 at (1) defined but not used [-Wunused-label]
Fkernel.f:29:13:
29 | 2 STEP = (DHI - DLO) / FLOAT(NFT)
| 1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
Fkernel.f:32:11:
32 | HW = WINDOW / STEP
| 1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
Fkernel.f:37:13:
37 | DLO1 = DLO - STEP * HALF
| 1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
Fkernel.f:41:11:
41 | WT = (DT(I) - DLO1) / STEP
| 1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
Fkernel.f:654:21:
654 | tempr = xreal(ii)
| 1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
Fkernel.f:511:16:
511 | xs0 = xreal(i0) + xreal(i2)
| 1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
Fkernel.f:512:16:
512 | xs1 = xreal(i0) - xreal(i2)
| 1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
Fkernel.f:513:16:
513 | ys0 = ximag(i0) + ximag(i2)
| 1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
Fkernel.f:514:16:
514 | ys1 = ximag(i0) - ximag(i2)
| 1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
Fkernel.f:515:16:
515 | xs2 = xreal(i1) + xreal(i3)
| 1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
Fkernel.f:516:16:
516 | xs3 = xreal(i1) - xreal(i3)
| 1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
Fkernel.f:517:16:
517 | ys2 = ximag(i1) + ximag(i3)
| 1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
Fkernel.f:518:16:
518 | ys3 = ximag(i1) - ximag(i3)
| 1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
Fkernel.f:569:16:
569 | tempr = xreal(k) + xreal(k+1)
| 1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
Fkernel.f:572:16:
572 | tempr = ximag(k) + ximag(k+1)
| 1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
Fkernel.f:353:10:
353 | Z = HALF * (X(1) + X(N+1))
| 1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
Fkernel.f:374:11:
374 | AN = QUART * (X(K) + X(L))
| 1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
Fkernel.f:375:11:
375 | BN = QUART * (X(KI) - X(LI))
| 1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
Fkernel.f:376:11:
376 | CN = QUART * (X(KI) + X(LI))
| 1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
Fkernel.f:377:11:
377 | DN = QUART * (X(L) - X(K))
| 1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
Fkernel.f:58:12:
58 | 10 JHI = SQRT(BIG / FAC1)
| 1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
Fkernel.f:66:14:
66 | FAC = ((1.0-2.0*RJFAC)**3 * EXP(RJFAC* (SIG/WINDOW)**2)) / BC
| 1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
Fkernel.f:429:10:
429 | Z = X(1) + X(N+1)
| 1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
Fkernel.f:450:11:
450 | AN = X(K) + X(L)
| 1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
Fkernel.f:451:11:
451 | BN = X(KI) - X(LI)
| 1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
Fkernel.f:452:11:
452 | PN = X(K) - X(L)
| 1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
Fkernel.f:453:11:
453 | QN = X(KI) + X(LI)
| 1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
Fkernel.f:152:5:
152 | 10 JHI = SQRT(BIG / FAC1)
| 1
Warning: Label 10 at (1) defined but not used [-Wunused-label]
Fkernel.f:123:5:
123 | 2 STEP = (DHI - DLO) / FLOAT(NFT)
| 1
Warning: Label 2 at (1) defined but not used [-Wunused-label]
Fkernel.f:123:13:
123 | 2 STEP = (DHI - DLO) / FLOAT(NFT)
| 1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
Fkernel.f:126:11:
126 | HW = WINDOW / STEP
| 1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
Fkernel.f:131:13:
131 | DLO1 = DLO - STEP * HALF
| 1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
Fkernel.f:135:11:
135 | WT = (DT(I) - DLO1) / STEP
| 1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
Fkernel.f:152:12:
152 | 10 JHI = SQRT(BIG / FAC1)
| 1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
Fkernel.f:160:12:
160 | FAC = EXP(-RJFAC*(1.0-(SIG/WINDOW)**2)) / BC
| 1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
Fkernel.f:247:5:
247 | 10 JHI = SQRT(BIG / FAC1)
| 1
Warning: Label 10 at (1) defined but not used [-Wunused-label]
Fkernel.f:218:5:
218 | 2 STEP = (DHI - DLO) / FLOAT(NFT)
| 1
Warning: Label 2 at (1) defined but not used [-Wunused-label]
Fkernel.f:218:13:
218 | 2 STEP = (DHI - DLO) / FLOAT(NFT)
| 1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
Fkernel.f:221:11:
221 | HW = WINDOW / STEP
| 1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
Fkernel.f:226:13:
226 | DLO1 = DLO - STEP * HALF
| 1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
Fkernel.f:230:11:
230 | WT = (DT(I) - DLO1) / STEP
| 1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
Fkernel.f:247:12:
247 | 10 JHI = SQRT(BIG / FAC1)
| 1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
Fkernel.f:255:12:
255 | FAC = EXP(-RJFAC)*(1.0+(SIG/WINDOW)**2*RJFAC*2.0)/ BC
| 1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c registerDynamicSymbol.c -o registerDynamicSymbol.o
gcc-13 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o decon.so Ckernel.o Fkernel.o registerDynamicSymbol.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpjxqK5Q/R.INSTALL20aaa06e55a394/decon/src'
make[1]: Entering directory '/tmp/RtmpjxqK5Q/R.INSTALL20aaa06e55a394/decon/src'
make[1]: Leaving directory '/tmp/RtmpjxqK5Q/R.INSTALL20aaa06e55a394/decon/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-decon/00new/decon/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘decon’
finding HTML links ... done
DeconCPdf html
DeconCdf html
DeconNpr html
DeconPdf html
bw.dboot1 html
bw.dboot2 html
bw.dmise html
bw.dnrd html
framingham html
galaxy html
npdenest html
npreg html
plot.Decon html
print.Decon html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (decon)