* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘deSolve’ ...
** package ‘deSolve’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’
using Fortran compiler: ‘GNU Fortran (Debian 13.2.0-13) 13.2.0’
make[1]: Entering directory '/tmp/RtmpO7hhfL/R.INSTALL1ce0166b16261e/deSolve/src'
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c DLLutil.c -o DLLutil.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_init_deSolve.c -o R_init_deSolve.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c brent.c -o brent.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c call_daspk.c -o call_daspk.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c call_euler.c -o call_euler.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c call_iteration.c -o call_iteration.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c call_lsoda.c -o call_lsoda.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c call_radau.c -o call_radau.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c call_rk4.c -o call_rk4.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c call_rkAuto.c -o call_rkAuto.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c call_rkFixed.c -o call_rkFixed.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c call_rkImplicit.c -o call_rkImplicit.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c call_zvode.c -o call_zvode.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c daux.f -o daux.o
daux.f:7:44:
7 | DOUBLE PRECISION FUNCTION D1MACH (IDUM)
| 1
Warning: Unused dummy argument ‘idum’ at (1) [-Wunused-dummy-argument]
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c ddaspk.f -o ddaspk.o
ddaspk.f:3513:58:
3513 | DOUBLE PRECISION FUNCTION DDWNRM(NEQ,V,RWT,RPAR,IPAR)
| 1
Warning: Unused dummy argument ‘ipar’ at (1) [-Wunused-dummy-argument]
ddaspk.f:3513:53:
3513 | DOUBLE PRECISION FUNCTION DDWNRM(NEQ,V,RWT,RPAR,IPAR)
| 1
Warning: Unused dummy argument ‘rpar’ at (1) [-Wunused-dummy-argument]
ddaspk.f:5198:64:
5198 | * SQRTN, RSQRTN, LSOFF, STPTOL, IRET, RES, IRES, PSOL, WM, IWM,
| 1
Warning: Unused dummy argument ‘wm’ at (1) [-Wunused-dummy-argument]
ddaspk.f:4398:48:
4398 | * DUMSVR,DELTA,E,WM,IWM,CJ,DUMS,DUMR,DUME,EPCON,
| 1
Warning: Unused dummy argument ‘dume’ at (1) [-Wunused-dummy-argument]
ddaspk.f:4398:43:
4398 | * DUMSVR,DELTA,E,WM,IWM,CJ,DUMS,DUMR,DUME,EPCON,
| 1
Warning: Unused dummy argument ‘dumr’ at (1) [-Wunused-dummy-argument]
ddaspk.f:4398:38:
4398 | * DUMSVR,DELTA,E,WM,IWM,CJ,DUMS,DUMR,DUME,EPCON,
| 1
Warning: Unused dummy argument ‘dums’ at (1) [-Wunused-dummy-argument]
ddaspk.f:4398:15:
4398 | * DUMSVR,DELTA,E,WM,IWM,CJ,DUMS,DUMR,DUME,EPCON,
| 1
Warning: Unused dummy argument ‘dumsvr’ at (1) [-Wunused-dummy-argument]
ddaspk.f:4399:47:
4399 | * S,CONFAC,TOLNEW,MULDEL,MAXIT,IRES,IDUM,IERNEW)
| 1
Warning: Unused dummy argument ‘idum’ at (1) [-Wunused-dummy-argument]
ddaspk.f:4397:45:
4397 | SUBROUTINE DNSD(X,Y,YPRIME,NEQ,RES,PDUM,WT,RPAR,IPAR,
| 1
Warning: Unused dummy argument ‘pdum’ at (1) [-Wunused-dummy-argument]
ddaspk.f:6506:26:
6506 | SUBROUTINE SCALE(NEQ, NIND, SCAL, H)
| 1
Warning: Unused dummy argument ‘neq’ at (1) [-Wunused-dummy-argument]
ddaspk.f:3381:56:
3381 | SUBROUTINE DDAWTS(NEQ,IWT,RTOL,ATOL,Y,WT,RPAR,IPAR)
| 1
Warning: Unused dummy argument ‘ipar’ at (1) [-Wunused-dummy-argument]
ddaspk.f:3381:51:
3381 | SUBROUTINE DDAWTS(NEQ,IWT,RTOL,ATOL,Y,WT,RPAR,IPAR)
| 1
Warning: Unused dummy argument ‘rpar’ at (1) [-Wunused-dummy-argument]
ddaspk.f:2477:27:
2477 | * PWK, WM, IWM, HMIN, UROUND, EPLI, SQRTN, RSQRTN, EPCONI,
| 1
Warning: Unused dummy argument ‘hmin’ at (1) [-Wunused-dummy-argument]
ddaspk.f:3553:12:
3553 | * DUME,DUMS,DUMR,EPCON,RATEMX,STPTOL,JFDUM,
| 1
Warning: Unused dummy argument ‘dume’ at (1) [-Wunused-dummy-argument]
ddaspk.f:3552:54:
3552 | * JSDUM,RPAR,IPAR,DUMSVR,DELTA,R,YIC,YPIC,DUMPWK,WM,IWM,CJ,UROUND,
| 1
Warning: Unused dummy argument ‘dumpwk’ at (1) [-Wunused-dummy-argument]
ddaspk.f:3553:22:
3553 | * DUME,DUMS,DUMR,EPCON,RATEMX,STPTOL,JFDUM,
| 1
Warning: Unused dummy argument ‘dumr’ at (1) [-Wunused-dummy-argument]
ddaspk.f:3553:17:
3553 | * DUME,DUMS,DUMR,EPCON,RATEMX,STPTOL,JFDUM,
| 1
Warning: Unused dummy argument ‘dums’ at (1) [-Wunused-dummy-argument]
ddaspk.f:3552:30:
3552 | * JSDUM,RPAR,IPAR,DUMSVR,DELTA,R,YIC,YPIC,DUMPWK,WM,IWM,CJ,UROUND,
| 1
Warning: Unused dummy argument ‘dumsvr’ at (1) [-Wunused-dummy-argument]
ddaspk.f:3553:48:
3553 | * DUME,DUMS,DUMR,EPCON,RATEMX,STPTOL,JFDUM,
| 1
Warning: Unused dummy argument ‘jfdum’ at (1) [-Wunused-dummy-argument]
ddaspk.f:3552:13:
3552 | * JSDUM,RPAR,IPAR,DUMSVR,DELTA,R,YIC,YPIC,DUMPWK,WM,IWM,CJ,UROUND,
| 1
Warning: Unused dummy argument ‘jsdum’ at (1) [-Wunused-dummy-argument]
ddaspk.f:3551:61:
3551 | SUBROUTINE DDASID(X,Y,YPRIME,NEQ,ICOPT,ID,RES,JACD,PDUM,H,WT,
| 1
Warning: Unused dummy argument ‘pdum’ at (1) [-Wunused-dummy-argument]
ddaspk.f:4126:26:
4126 | * EPCON,JCALC,JFDUM,KP1,NONNEG,NTYPE,IERNLS)
| 1
Warning: Unused dummy argument ‘jfdum’ at (1) [-Wunused-dummy-argument]
ddaspk.f:4833:67:
4833 | * JSKIP,RPAR,IPAR,SAVR,DELTA,R,YIC,YPIC,PWK,WM,IWM,CJ,UROUND,
| 1
Warning: Unused dummy argument ‘uround’ at (1) [-Wunused-dummy-argument]
ddaspk.f:5464:40:
5464 | * WM,IWM,CJ,CJOLD,CJLAST,S,UROUND,EPLI,SQRTN,RSQRTN,
| 1
Warning: Unused dummy argument ‘uround’ at (1) [-Wunused-dummy-argument]
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c deSolve_utils.c -o deSolve_utils.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c dintdy2.f -o dintdy2.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c dlinpk.f -o dlinpk.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c dlsoder.f -o dlsoder.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c dsparsk.f -o dsparsk.o
dsparsk.f:740:42:
740 | subroutine add_lvst(istart,iend,nlev,riord,ja,ia,mask,maskval)
| 1
Warning: Unused dummy argument ‘nlev’ at (1) [-Wunused-dummy-argument]
dsparsk.f:416:27:
416 | subroutine getbwd(n,a,ja,ia,ml,mu)
| 1
Warning: Unused dummy argument ‘a’ at (1) [-Wunused-dummy-argument]
dsparsk.f:507:42:
507 | subroutine rnrms (nrow, nrm, a, ja, ia, diag)
| 1
Warning: Unused dummy argument ‘ja’ at (1) [-Wunused-dummy-argument]
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c dvode.f -o dvode.o
dvode.f:1953:35:
1953 | & F, JAC, PDUM, NFLAG, RPAR, IPAR)
| 1
Warning: Unused dummy argument ‘pdum’ at (1) [-Wunused-dummy-argument]
dvode.f:1952:42:
1952 | SUBROUTINE DVNLSD (Y, YH, LDYH, VSAV, SAVF, EWT, ACOR, IWM, WM, &
| 1
Warning: Unused dummy argument ‘vsav’ at (1) [-Wunused-dummy-argument]
dvode.f:1325:72:
1325 | ETA = MIN(ETA,ONE)
| ^
Warning: ‘etaq’ may be used uninitialized [-Wmaybe-uninitialized]
dvode.f:1197:15:
1197 | & ETAQ, ETAQM1, ETAQP1, FLOTL, ONE, ONEPSM, &
| ^
note: ‘etaq’ was declared here
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c errmsg.f -o errmsg.o
errmsg.f:31:40:
31 | SUBROUTINE XERRWD (MSG, NMES, NERR, LEVEL, NI, I1, I2, NR, R1, R2)
| 1
Warning: Unused dummy argument ‘nerr’ at (1) [-Wunused-dummy-argument]
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ex_Aquaphy.c -o ex_Aquaphy.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ex_CCL4model.c -o ex_CCL4model.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ex_ChemicalDAE.c -o ex_ChemicalDAE.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ex_SCOC.c -o ex_SCOC.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c forcings.c -o forcings.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lags.c -o lags.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c opkda1.f -o opkda1.o
opkda1.f:528:40:
528 | SUBROUTINE DSOLSY (WM, IWM, X, TEM)
| 1
Warning: Unused dummy argument ‘tem’ at (1) [-Wunused-dummy-argument]
opkda1.f:1975:40:
1975 | SUBROUTINE DSOLSS (WK, IWK, X, TEM)
| 1
Warning: Unused dummy argument ‘tem’ at (1) [-Wunused-dummy-argument]
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c opkdmain.f -o opkdmain.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c radau5.f -o radau5.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c radau5a.f -o radau5a.o
radau5a.f:528:58:
528 | & M1,M2,NM1,FAC1,E1,LDE1,Z1,F1,IP1,IPHES,IER,IJOB)
| 1
Warning: Unused dummy argument ‘ier’ at (1) [-Wunused-dummy-argument]
radau5a.f:765:26:
765 | & F2,F3,CONT,IP2,IPHES,IER,IJOB)
| 1
Warning: Unused dummy argument ‘cont’ at (1) [-Wunused-dummy-argument]
radau5a.f:765:40:
765 | & F2,F3,CONT,IP2,IPHES,IER,IJOB)
| 1
Warning: Unused dummy argument ‘ier’ at (1) [-Wunused-dummy-argument]
radau5a.f:1072:29:
1072 | & F1,F2,F3,CONT,IP1,IP2,IPHES,IER,IJOB)
| 1
Warning: Unused dummy argument ‘cont’ at (1) [-Wunused-dummy-argument]
radau5a.f:1072:47:
1072 | & F1,F2,F3,CONT,IP1,IP2,IPHES,IER,IJOB)
| 1
Warning: Unused dummy argument ‘ier’ at (1) [-Wunused-dummy-argument]
radau5a.f:2465:53:
2465 | SUBROUTINE SLVSEU(N,FJAC,LDJAC,MLJAC,MUJAC,FMAS,LDMAS,MLMAS,MUMAS,
| 1
Warning: Unused dummy argument ‘fmas’ at (1) [-Wunused-dummy-argument]
radau5a.f:2465:65:
2465 | SUBROUTINE SLVSEU(N,FJAC,LDJAC,MLJAC,MUJAC,FMAS,LDMAS,MLMAS,MUMAS,
| 1
Warning: Unused dummy argument ‘mlmas’ at (1) [-Wunused-dummy-argument]
radau5a.f:2465:71:
2465 | SUBROUTINE SLVSEU(N,FJAC,LDJAC,MLJAC,MUJAC,FMAS,LDMAS,MLMAS,MUMAS,
| 1
Warning: Unused dummy argument ‘mumas’ at (1) [-Wunused-dummy-argument]
radau5a.f:1483:8:
1483 | 48 MM=M1/M2
| ^
Warning: ‘mm’ may be used uninitialized [-Wmaybe-uninitialized]
radau5a.f:1861:8:
1861 | 48 MM=M1/M2
| ^
Warning: ‘mm’ may be used uninitialized [-Wmaybe-uninitialized]
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rk_auto.c -o rk_auto.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rk_fixed.c -o rk_fixed.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rk_implicit.c -o rk_implicit.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rk_util.c -o rk_util.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rprintf.c -o rprintf.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c twoDmap.c -o twoDmap.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c zvode.f -o zvode.o
zvode.f:2846:35:
2846 | 1 F, JAC, PDUM, NFLAG, RPAR, IPAR)
| 1
Warning: Unused dummy argument ‘pdum’ at (1) [-Wunused-dummy-argument]
zvode.f:2845:42:
2845 | SUBROUTINE ZVNLSD (Y, YH, LDYH, VSAV, SAVF, EWT, ACOR, IWM, WM,
| 1
Warning: Unused dummy argument ‘vsav’ at (1) [-Wunused-dummy-argument]
gcc-13 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o deSolve.so DLLutil.o R_init_deSolve.o brent.o call_daspk.o call_euler.o call_iteration.o call_lsoda.o call_radau.o call_rk4.o call_rkAuto.o call_rkFixed.o call_rkImplicit.o call_zvode.o daux.o ddaspk.o deSolve_utils.o dintdy2.o dlinpk.o dlsoder.o dsparsk.o dvode.o errmsg.o ex_Aquaphy.o ex_CCL4model.o ex_ChemicalDAE.o ex_SCOC.o forcings.o lags.o opkda1.o opkdmain.o radau5.o radau5a.o rk_auto.o rk_fixed.o rk_implicit.o rk_util.o rprintf.o twoDmap.o zvode.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpO7hhfL/R.INSTALL1ce0166b16261e/deSolve/src'
make[1]: Entering directory '/tmp/RtmpO7hhfL/R.INSTALL1ce0166b16261e/deSolve/src'
make[1]: Leaving directory '/tmp/RtmpO7hhfL/R.INSTALL1ce0166b16261e/deSolve/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-deSolve/00new/deSolve/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for ‘matplot’ in package ‘deSolve’
** help
*** installing help indices
converting help for package ‘deSolve’
finding HTML links ... done
DLLfunc html
DLLres html
SCOC html
aquaphy html
ccl4data html
ccl4model html
checkDLL html
cleanEventTimes html
daspk html
deSolve-internal html
deSolve html
dede html
diagnostics html
diagnostics.deSolve html
events html
forcings html
lsoda html
lsodar html
lsode html
lsodes html
ode.1D html
ode.2D html
ode.3D html
ode html
ode.band html
plot.deSolve html
radau html
rk html
rk4 html
rkMethod html
timelags html
vode html
zvode html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (deSolve)