* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘datelife’ ...
** package ‘datelife’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘datelife’
finding HTML links ... done
birds_and_cats html
build_grove_list html
build_grove_matrix html
check_conflicting_calibrations html
check_ott_input html
choose_cluster html
classification_paths_from_taxonomy html
clean_ott_chronogram html
clean_taxon_info_children html
finding level-2 HTML links ... done
clean_tnrs html
cluster_patristicmatrix html
congruify_and_check html
congruify_and_mrca_multiPhylo html
congruify_and_mrca_phylo html
contributor_cache html
date_with_pbdb html
datelife_authors_tabulate html
datelife_result_MRCA html
datelife_result_median html
datelife_result_median_matrix html
datelife_result_sdm_matrix html
datelife_result_sdm_phylo html
datelife_result_study_index html
datelife_result_variance_matrix html
datelife_search html
datelife_use html
datelife_use_datelifequery html
dot-get_ott_lineage html
extract_calibrations_dateliferesult html
extract_calibrations_phylo html
extract_ott_ids html
felid_gdr_phylo_all html
felid_sdm html
filter_for_grove html
force_ultrametric html
get_all_calibrations html
get_all_descendant_species html
get_best_grove html
get_biggest_multiphylo html
get_bold_data html
get_calibrations_datelifequery html
get_calibrations_vector html
get_dated_otol_induced_subtree html
get_datelife_result html
get_datelife_result_datelifequery html
get_fossil_range html
get_goodmatrices html
get_mrbayes_node_constraints html
get_opentree_chronograms html
get_opentree_species html
get_otol_synthetic_tree html
get_ott_children html
get_ott_clade html
get_ott_lineage html
get_subset_array_dispatch html
get_taxon_summary html
get_tnrs_names html
get_valid_children html
input_process html
is_datelife_query html
is_datelife_result_empty html
is_good_chronogram html
is_n_overlap html
make_all_associations html
make_bladj_tree html
make_bold_otol_tree html
make_contributor_cache html
make_datelife_query html
make_datelife_query2 html
make_mrbayes_runfile html
make_mrbayes_tree html
make_otol_associations html
make_overlap_table html
make_sdm html
make_treebase_associations html
make_treebase_cache html
map_nodes_ott html
match_all_calibrations html
matrices_to_table html
matrix_to_table html
message_multiphylo html
missing_taxa_check html
mrca_calibrations html
opentree_chronograms html
patristic_matrix_MRCA html
patristic_matrix_array_congruify html
patristic_matrix_array_phylo_congruify
html
patristic_matrix_array_split html
patristic_matrix_array_subset html
patristic_matrix_array_subset_both html
patristic_matrix_list_to_array html
patristic_matrix_name_order_test html
patristic_matrix_name_reorder html
patristic_matrix_pad html
patristic_matrix_taxa_all_matching html
patristic_matrix_to_newick html
patristic_matrix_to_phylo html
patristic_matrix_unpad html
phylo_check html
phylo_congruify html
phylo_generate_uncertainty html
phylo_get_node_numbers html
phylo_get_subset_array html
phylo_get_subset_array_congruify html
phylo_has_brlen html
phylo_prune_missing_taxa html
phylo_subset_both html
phylo_tiplabel_space_to_underscore html
phylo_tiplabel_underscore_to_space html
phylo_to_patristic_matrix html
pick_grove html
plant_bold_otol_tree html
problems html
recover_mrcaott html
relevant_curators_tabulate html
results_list_process html
run html
run_mrbayes html
sample_trees html
some_ants_datelife_result html
subset2_search html
subset2_taxa html
summarize_congruifiedCalibrations html
summarize_datelife_result html
summarize_fossil_range html
summarize_summary_matrix html
summary.datelifeResult html
summary.matchedCalibrations html
summary_matrix_to_phylo html
summary_matrix_to_phylo_all html
summary_patristic_matrix_array html
threebirds_dr html
tnrs_match html
tree_add_dates html
tree_add_nodelabels html
tree_add_outgroup html
tree_check html
tree_fix_brlen html
tree_from_taxonomy html
tree_get_node_data html
tree_get_singleton_outgroup html
tree_node_tips html
treebase_cache html
update_all_cached html
update_datelife_cache html
use_all_calibrations html
use_calibrations html
use_calibrations_bladj html
use_calibrations_bladj.matchedCalibrations
html
use_calibrations_each html
use_calibrations_pathd8 html
use_calibrations_treePL html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (datelife)