* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘cxr’ ...
** package ‘cxr’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘cxr’
    finding HTML links ... done
    BH_er_lambdacov_global_effectcov_global_responsecov_global
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    BH_er_lambdacov_none_effectcov_none_responsecov_none
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    BH_pm_alpha_global_lambdacov_none_alphacov_none
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    BH_pm_alpha_none_lambdacov_none_alphacov_none
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    BH_pm_alpha_pairwise_lambdacov_global_alphacov_global
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    BH_pm_alpha_pairwise_lambdacov_global_alphacov_pairwise
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    BH_pm_alpha_pairwise_lambdacov_none_alphacov_none
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    BH_project_alpha_global_lambdacov_none_alphacov_none
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    BH_project_alpha_none_lambdacov_none_alphacov_none
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    BH_project_alpha_pairwise_lambdacov_global_alphacov_global
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    BH_project_alpha_pairwise_lambdacov_global_alphacov_pairwise
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    BH_project_alpha_pairwise_lambdacov_none_alphacov_none
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    LV_er_lambdacov_global_effectcov_global_responsecov_global
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    LV_er_lambdacov_none_effectcov_none_responsecov_none
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    LV_pm_alpha_global_lambdacov_none_alphacov_none
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    LV_pm_alpha_none_lambdacov_none_alphacov_none
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    LV_pm_alpha_pairwise_lambdacov_global_alphacov_global
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    LV_pm_alpha_pairwise_lambdacov_global_alphacov_pairwise
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    LV_pm_alpha_pairwise_lambdacov_none_alphacov_none
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    LV_project_alpha_global_lambdacov_none_alphacov_none
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    LV_project_alpha_none_lambdacov_none_alphacov_none
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    LV_project_alpha_pairwise_lambdacov_global_alphacov_global
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    LV_project_alpha_pairwise_lambdacov_global_alphacov_pairwise
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    LV_project_alpha_pairwise_lambdacov_none_alphacov_none
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    LW_er_lambdacov_global_effectcov_global_responsecov_global
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    LW_er_lambdacov_none_effectcov_none_responsecov_none
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    LW_pm_alpha_global_lambdacov_none_alphacov_none
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    LW_pm_alpha_none_lambdacov_none_alphacov_none
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    LW_pm_alpha_pairwise_lambdacov_global_alphacov_global
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    LW_pm_alpha_pairwise_lambdacov_global_alphacov_pairwise
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    LW_pm_alpha_pairwise_lambdacov_none_alphacov_none
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    LW_project_alpha_global_lambdacov_none_alphacov_none
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    LW_project_alpha_none_lambdacov_none_alphacov_none
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    LW_project_alpha_pairwise_lambdacov_global_alphacov_global
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    LW_project_alpha_pairwise_lambdacov_global_alphacov_pairwise
                                            html  
    LW_project_alpha_pairwise_lambdacov_none_alphacov_none
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    RK_er_lambdacov_global_effectcov_global_responsecov_global
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    RK_er_lambdacov_none_effectcov_none_responsecov_none
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    RK_pm_alpha_global_lambdacov_none_alphacov_none
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    RK_pm_alpha_none_lambdacov_none_alphacov_none
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    RK_pm_alpha_pairwise_lambdacov_global_alphacov_global
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    RK_pm_alpha_pairwise_lambdacov_global_alphacov_pairwise
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    RK_pm_alpha_pairwise_lambdacov_none_alphacov_none
                                            html  
    RK_project_alpha_global_lambdacov_none_alphacov_none
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    RK_project_alpha_none_lambdacov_none_alphacov_none
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    RK_project_alpha_pairwise_lambdacov_global_alphacov_global
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    RK_project_alpha_pairwise_lambdacov_global_alphacov_pairwise
                                            html  
    RK_project_alpha_pairwise_lambdacov_none_alphacov_none
                                            html  
    abundance                               html  
    abundance_projection                    html  
    avg_fitness_diff                        html  
    build_param                             html  
    calculate_densities                     html  
    competitive_ability                     html  
    cxr-package                             html  
    cxr_er_bootstrap                        html  
    cxr_er_fit                              html  
    cxr_generate_test_data                  html  
    cxr_pm_bootstrap                        html  
    cxr_pm_fit                              html  
    cxr_pm_multifit                         html  
    densities_to_df                         html  
    fill_demography_matrix                  html  
    fill_dispersal_matrix                   html  
    fill_transition_matrix                  html  
    fitness_ratio                           html  
    generate_vital_rate_coefs               html  
    glm_example_coefs                       html  
    metapopulation_example_param            html  
    neigh_list                              html  
    niche_overlap                           html  
    salinity_list                           html  
    spatial_sampling                        html  
    species_fitness                         html  
    species_rates                           html  
    summary.cxr_er_fit                      html  
    summary.cxr_pm_fit                      html  
    summary.cxr_pm_multifit                 html  
    vec_permutation_matrices                html  
    vital_rate                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cxr)