* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘curveDepth’ ...
** this is package ‘curveDepth’ version ‘0.1.0.9’
** package ‘curveDepth’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.3.0-7) 14.3.0’
using C++11
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpxFNwsk/R.INSTALL2eface7bc06faf/curveDepth/src'
g++-14 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:29,
from RcppExports.cpp:4:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
66 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.")
| ^
g++-14 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c depthsCurveHfsp.cpp -o depthsCurveHfsp.o
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:29,
from stdafx.h:17,
from depthsCurveHfsp.cpp:25:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
66 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.")
| ^
depthsCurveHfsp.cpp: In function ‘Rcpp::NumericMatrix distImages(arma::cube, int)’:
depthsCurveHfsp.cpp:104:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
104 | for (int i = 0; i < images.n_slices; i++){
| ~~^~~~~~~~~~~~~~~~~
depthsCurveHfsp.cpp:117:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
117 | for (int i = 0; i < images.n_slices - 1; i++){
| ~~^~~~~~~~~~~~~~~~~~~~~
depthsCurveHfsp.cpp:121:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
121 | for (int j = i + 1; j < images.n_slices; j++){
| ~~^~~~~~~~~~~~~~~~~
depthsCurveHfsp.cpp: In function ‘Rcpp::List images2curves(arma::cube)’:
depthsCurveHfsp.cpp:1012:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
1012 | for (int i = 0; i < images.n_slices; i++){
| ~~^~~~~~~~~~~~~~~~~
In file included from routines.h:16,
from stdafx.h:21:
hypermatrix.h: In instantiation of ‘int hypermatrix<BlockType>::clear() [with BlockType = double]’:
hypermatrix.h:155:14: required from ‘typeHypermatrix<UnitType>::typeHypermatrix(int, int*) [with UnitType = double]’
155 | this->clear();
| ~~~~~~~~~~~^~
routines.h:202:73: required from here
202 | ImageDensity(int d, int* ns) : typeHypermatrix<double>(d, ns), Curve(d) {
| ^
hypermatrix.h:42:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare]
42 | for (int i = 0; i < size; i++){
| ~~^~~~~~
g++-14 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c routines.cpp -o routines.o
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:29,
from stdafx.h:17,
from routines.cpp:16:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
66 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.")
| ^
routines.cpp: In function ‘int generateDirections(int, int, int, double**)’:
routines.cpp:68:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
68 | for (unsigned int i = 0; i < nDirs; i++){
| ~~^~~~~~~
routines.cpp:70:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
70 | for (unsigned int j = 0; j < d; j++){
| ~~^~~
routines.cpp:76:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
76 | for (unsigned int j = 0; j < d; j++){
| ~~^~~
In file included from routines.h:16,
from stdafx.h:21:
hypermatrix.h: In instantiation of ‘UnitType typeHypermatrix<UnitType>::getNNonzero() [with UnitType = double]’:
routines.cpp:494:28: required from here
494 | int nPixels = getNNonzero();
| ~~~~~~~~~~~^~
hypermatrix.h:204:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare]
204 | for (int i = 0; i < this->size; i++){
| ~~^~~~~~~~~~~~
hypermatrix.h: In instantiation of ‘int typeHypermatrix<UnitType>::add(typeHypermatrix<UnitType>&) [with UnitType = double]’:
routines.cpp:1244:19: required from here
1244 | genPattern.add(imageDensities[i]);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
hypermatrix.h:163:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare]
163 | for (int i = 0; i < this->size; i++){
| ~~^~~~~~~~~~~~
hypermatrix.h: In instantiation of ‘int typeHypermatrix<UnitType>::standardize() [with UnitType = double]’:
routines.cpp:1246:25: required from here
1246 | genPattern.standardize();
| ~~~~~~~~~~~~~~~~~~~~~~^~
hypermatrix.h:186:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare]
186 | for (int i = 0; i < this->size; i++){
| ~~^~~~~~~~~~~~
hypermatrix.h: In instantiation of ‘UnitType typeHypermatrix<UnitType>::getTotal() [with UnitType = double]’:
routines.cpp:1247:31: required from here
1247 | Rcout << genPattern.getTotal() << " ";
| ~~~~~~~~~~~~~~~~~~~^~
hypermatrix.h:195:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare]
195 | for (int i = 0; i < this->size; i++){
| ~~^~~~~~~~~~~~
hypermatrix.h: In instantiation of ‘int hypermatrix<BlockType>::clear() [with BlockType = double]’:
hypermatrix.h:155:14: required from ‘typeHypermatrix<UnitType>::typeHypermatrix(int, int*) [with UnitType = double]’
155 | this->clear();
| ~~~~~~~~~~~^~
routines.h:202:73: required from here
202 | ImageDensity(int d, int* ns) : typeHypermatrix<double>(d, ns), Curve(d) {
| ^
hypermatrix.h:42:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare]
42 | for (int i = 0; i < size; i++){
| ~~^~~~~~
hypermatrix.h: In instantiation of ‘int hypermatrix<BlockType>::clear() [with BlockType = long long unsigned int]’:
hypermatrix.h:68:33: required from ‘void binaryHypermatrix<BlockType>::clear() [with BlockType = long long unsigned int]’
68 | hypermatrix<BlockType>::clear();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
routines.cpp:493:17: required from here
493 | binImage.clear();
| ~~~~~~~~~~~~~~^~
hypermatrix.h:42:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare]
42 | for (int i = 0; i < size; i++){
| ~~^~~~~~
g++-14 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c voxelize.cpp -o voxelize.o
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:29,
from stdafx.h:17,
from voxelize.cpp:13:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
66 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.")
| ^
In file included from routines.h:16,
from stdafx.h:21:
hypermatrix.h: In instantiation of ‘int hypermatrix<BlockType>::clear() [with BlockType = double]’:
hypermatrix.h:155:14: required from ‘typeHypermatrix<UnitType>::typeHypermatrix(int, int*) [with UnitType = double]’
155 | this->clear();
| ~~~~~~~~~~~^~
routines.h:202:73: required from here
202 | ImageDensity(int d, int* ns) : typeHypermatrix<double>(d, ns), Curve(d) {
| ^
hypermatrix.h:42:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare]
42 | for (int i = 0; i < size; i++){
| ~~^~~~~~
hypermatrix.h: In instantiation of ‘int hypermatrix<BlockType>::clear() [with BlockType = long long unsigned int]’:
hypermatrix.h:68:33: required from ‘void binaryHypermatrix<BlockType>::clear() [with BlockType = long long unsigned int]’
68 | hypermatrix<BlockType>::clear();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
hypermatrix.h:85:8: required from ‘binaryHypermatrix<BlockType>::binaryHypermatrix(int, int*) [with BlockType = long long unsigned int]’
85 | this->clear();
| ~~~~~~^~~~~
voxelize.cpp:101:70: required from here
101 | binaryHypermatrix<unsigned long long> checkVoxels(nFcns, nDiscretes);
| ^
hypermatrix.h:42:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare]
42 | for (int i = 0; i < size; i++){
| ~~^~~~~~
g++-14 -std=gnu++11 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o curveDepth.so RcppExports.o depthsCurveHfsp.o routines.o voxelize.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpxFNwsk/R.INSTALL2eface7bc06faf/curveDepth/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpxFNwsk/R.INSTALL2eface7bc06faf/curveDepth/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpxFNwsk/R.INSTALL2eface7bc06faf/curveDepth/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-curveDepth/00new/curveDepth/libs
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘curveDepth’
finding HTML links ... done
depth.curve.Tukey html
depthc.Tukey html
dist.curves html
dist.curves.asymm html
dist.images html
images2curves html
mnistShort017 html
sample.curves html
voxelize html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (curveDepth)