Install log for 'cuda.ml'

* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘cuda.ml’ ...
** package ‘cuda.ml’ successfully unpacked and MD5 sums checked
** using staged installation
** preparing to configure package 'cuda.ml' ...
*** configured file: 'src/CMakeLists.txt.in' => 'src/CMakeLists.txt'
*** configured file: 'src/Makevars.in' => 'src/Makevars'
** finished configure for package 'cuda.ml'
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’
make[1]: Entering directory '/tmp/RtmpX19VVM/R.INSTALL129de767306a5c/cuda.ml/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/tmp/RtmpX19VVM/R.INSTALL129de767306a5c/cuda.ml/src/stubs' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/tmp/RtmpX19VVM/R.INSTALL129de767306a5c/cuda.ml/src/stubs' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c agglomerative_clustering.cpp -o agglomerative_clustering.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/tmp/RtmpX19VVM/R.INSTALL129de767306a5c/cuda.ml/src/stubs' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c cd.cpp -o cd.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/tmp/RtmpX19VVM/R.INSTALL129de767306a5c/cuda.ml/src/stubs' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c cuml_utils.cpp -o cuml_utils.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/tmp/RtmpX19VVM/R.INSTALL129de767306a5c/cuda.ml/src/stubs' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c dbscan.cpp -o dbscan.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/tmp/RtmpX19VVM/R.INSTALL129de767306a5c/cuda.ml/src/stubs' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c example_linear_model.cpp -o example_linear_model.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/tmp/RtmpX19VVM/R.INSTALL129de767306a5c/cuda.ml/src/stubs' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c fil.cpp -o fil.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/tmp/RtmpX19VVM/R.INSTALL129de767306a5c/cuda.ml/src/stubs' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c kmeans.cpp -o kmeans.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/tmp/RtmpX19VVM/R.INSTALL129de767306a5c/cuda.ml/src/stubs' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c knn.cpp -o knn.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/tmp/RtmpX19VVM/R.INSTALL129de767306a5c/cuda.ml/src/stubs' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c lm_predict.cpp -o lm_predict.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/tmp/RtmpX19VVM/R.INSTALL129de767306a5c/cuda.ml/src/stubs' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c ols.cpp -o ols.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/tmp/RtmpX19VVM/R.INSTALL129de767306a5c/cuda.ml/src/stubs' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c pca.cpp -o pca.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/tmp/RtmpX19VVM/R.INSTALL129de767306a5c/cuda.ml/src/stubs' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c qn.cpp -o qn.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/tmp/RtmpX19VVM/R.INSTALL129de767306a5c/cuda.ml/src/stubs' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c random_forest_classifier.cpp -o random_forest_classifier.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/tmp/RtmpX19VVM/R.INSTALL129de767306a5c/cuda.ml/src/stubs' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c random_forest_regressor.cpp -o random_forest_regressor.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/tmp/RtmpX19VVM/R.INSTALL129de767306a5c/cuda.ml/src/stubs' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c random_projection.cpp -o random_projection.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/tmp/RtmpX19VVM/R.INSTALL129de767306a5c/cuda.ml/src/stubs' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c ridge.cpp -o ridge.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/tmp/RtmpX19VVM/R.INSTALL129de767306a5c/cuda.ml/src/stubs' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c sgd.cpp -o sgd.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/tmp/RtmpX19VVM/R.INSTALL129de767306a5c/cuda.ml/src/stubs' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c svm_classifier.cpp -o svm_classifier.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/tmp/RtmpX19VVM/R.INSTALL129de767306a5c/cuda.ml/src/stubs' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c svm_regressor.cpp -o svm_regressor.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/tmp/RtmpX19VVM/R.INSTALL129de767306a5c/cuda.ml/src/stubs' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c tsne.cpp -o tsne.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/tmp/RtmpX19VVM/R.INSTALL129de767306a5c/cuda.ml/src/stubs' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c tsvd.cpp -o tsvd.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/tmp/RtmpX19VVM/R.INSTALL129de767306a5c/cuda.ml/src/stubs' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c umap.cpp -o umap.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o cuda.ml.so RcppExports.o agglomerative_clustering.o cd.o cuml_utils.o dbscan.o example_linear_model.o fil.o kmeans.o knn.o lm_predict.o ols.o pca.o qn.o random_forest_classifier.o random_forest_regressor.o random_projection.o ridge.o sgd.o svm_classifier.o svm_regressor.o tsne.o tsvd.o umap.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpX19VVM/R.INSTALL129de767306a5c/cuda.ml/src'
make[1]: Entering directory '/tmp/RtmpX19VVM/R.INSTALL129de767306a5c/cuda.ml/src'
make[1]: Leaving directory '/tmp/RtmpX19VVM/R.INSTALL129de767306a5c/cuda.ml/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-cuda.ml/00new/cuda.ml/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘cuda.ml’
    finding HTML links ... done
    cuML_major_version                      html  
    cuML_minor_version                      html  
    cuda.ml                                 html  
    cuda_ml_agglomerative_clustering        html  
    cuda_ml_can_predict_class_probabilities
                                            html  
    cuda_ml_dbscan                          html  
    cuda_ml_elastic_net                     html  
    cuda_ml_fil_enabled                     html  
    cuda_ml_fil_load_model                  html  
    cuda_ml_inverse_transform               html  
    cuda_ml_is_classifier                   html  
    cuda_ml_kmeans                          html  
    cuda_ml_knn                             html  
    cuda_ml_knn_algo_ivfflat                html  
    cuda_ml_knn_algo_ivfpq                  html  
    cuda_ml_knn_algo_ivfsq                  html  
    cuda_ml_lasso                           html  
    cuda_ml_logistic_reg                    html  
    cuda_ml_ols                             html  
    cuda_ml_pca                             html  
    cuda_ml_rand_forest                     html  
    cuda_ml_rand_proj                       html  
    cuda_ml_ridge                           html  
    cuda_ml_serialize                       html  
    cuda_ml_sgd                             html  
    cuda_ml_svm                             html  
    cuda_ml_transform                       html  
    cuda_ml_tsne                            html  
    cuda_ml_tsvd                            html  
    cuda_ml_umap                            html  
    cuda_ml_unserialize                     html  
    has_cuML                                html  
    predict.cuda_ml_fil                     html  
    predict.cuda_ml_knn                     html  
    predict.cuda_ml_linear_model            html  
    predict.cuda_ml_logistic_reg            html  
    predict.cuda_ml_rand_forest             html  
    predict.cuda_ml_svm                     html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cuda.ml)