* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘crmPack’ ...
** this is package ‘crmPack’ version ‘2.0.1’
** package ‘crmPack’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘crmPack’
finding HTML links ... done
CohortSize-class html
CohortSizeConst-class html
CohortSizeDLT-class html
CohortSizeMax-class html
CohortSizeMin-class html
CohortSizeOrdinal-class html
CohortSizeParts-class html
CohortSizeRange-class html
CrmPackClass html
DADesign-class html
DALogisticLogNormal-class html
DASimulations-class html
DLTLikelihood html
Data-class html
DataDA-class html
DataDual-class html
DataGrouped-class html
DataMixture-class html
DataOrdinal-class html
DataParts-class html
Design-class html
DesignGrouped-class html
DesignOrdinal-class html
DualDesign-class html
DualEndpoint-class html
DualEndpointBeta-class html
DualEndpointEmax-class html
DualEndpointRW-class html
DualResponsesDesign-class html
DualResponsesSamplesDesign-class html
DualSimulations-class html
DualSimulationsSummary-class html
EffFlexi-class html
Effloglog-class html
FractionalCRM-class html
GeneralData-class html
GeneralModel-class html
GeneralSimulations-class html
GeneralSimulationsSummary-class html
Increments-class html
IncrementsDoseLevels-class html
IncrementsHSRBeta-class html
IncrementsMaxToxProb-class html
IncrementsMin-class html
IncrementsOrdinal-class html
IncrementsRelative-class html
IncrementsRelativeDLT-class html
IncrementsRelativeDLTCurrent-class html
IncrementsRelativeParts-class html
LogisticIndepBeta-class html
LogisticKadane-class html
LogisticKadaneBetaGamma-class html
LogisticLogNormal-class html
LogisticLogNormalGrouped-class html
LogisticLogNormalMixture-class html
LogisticLogNormalOrdinal-class html
LogisticLogNormalSub-class html
LogisticNormal-class html
LogisticNormalFixedMixture-class html
LogisticNormalMixture-class html
McmcOptions-class html
MinimalInformative html
ModelEff-class html
ModelLogNormal-class html
ModelParamsNormal-class html
ModelPseudo-class html
ModelTox-class html
NextBest-class html
NextBestDualEndpoint-class html
NextBestEWOC-class html
NextBestInfTheory-class html
NextBestMTD-class html
NextBestMaxGain-class html
NextBestMaxGainSamples-class html
NextBestMinDist-class html
NextBestNCRM-class html
NextBestNCRMLoss-class html
NextBestOrdinal-class html
NextBestProbMTDLTE-class html
NextBestProbMTDMinDist-class html
NextBestTD-class html
NextBestTDsamples-class html
NextBestThreePlusThree-class html
OneParExpPrior-class html
OneParLogNormalPrior-class html
ProbitLogNormal-class html
ProbitLogNormalRel-class html
PseudoDualFlexiSimulations-class html
PseudoDualSimulations-class html
PseudoDualSimulationsSummary-class html
PseudoSimulations-class html
PseudoSimulationsSummary-class html
Quantiles2LogisticNormal html
RuleDesign-class html
RuleDesignOrdinal-class html
SafetyWindow-class html
SafetyWindowConst-class html
SafetyWindowSize-class html
Samples-class html
Simulations-class html
SimulationsSummary-class html
StartingDose-class html
Stopping-class html
StoppingAll-class html
StoppingAny-class html
StoppingCohortsNearDose-class html
StoppingExternal-class html
StoppingHighestDose-class html
StoppingList-class html
StoppingLowestDoseHSRBeta-class html
StoppingMTDCV-class html
StoppingMTDdistribution-class html
StoppingMaxGainCIRatio-class html
StoppingMinCohorts-class html
StoppingMinPatients-class html
StoppingMissingDose-class html
StoppingOrdinal-class html
StoppingPatientsNearDose-class html
StoppingSpecificDose-class html
StoppingTDCIRatio-class html
StoppingTargetBiomarker-class html
StoppingTargetProb-class html
TDDesign-class html
TDsamplesDesign-class html
TITELogisticLogNormal-class html
Validate html
and-Stopping-Stopping-method html
and-Stopping-StoppingAll-method html
and-StoppingAll-Stopping-method html
approximate html
assertions html
biomarker html
check_equal html
check_format html
check_length html
check_probabilities html
check_probability html
check_probability_range html
check_range html
crmPack html
crmPackExample html
crmPackHelp html
dapply html
dinvGamma html
dose html
doseFunction html
dose_grid_range html
efficacy html
efficacyFunction html
enable_logging html
examine html
fit html
fitGain html
fitPEM html
gain html
get-Samples-character-method html
getEff html
get_result_list html
h_all_equivalent html
h_barplot_percentages html
h_blind_plot_data html
h_calc_report_label_percentage html
h_check_fun_formals html
h_convert_ordinal_data html
h_convert_ordinal_model html
h_convert_ordinal_samples html
h_covr_helpers html
h_default_if_empty html
h_determine_dlts html
h_find_interval html
h_format_number html
h_get_formatted_dosegrid html
h_get_min_inf_beta html
h_get_quantiles_start_values html
h_group_data html
h_in_range html
h_info_theory_dist html
h_is_positive_definite html
h_jags_add_dummy html
h_jags_extract_samples html
h_jags_get_data html
h_jags_get_model_inits html
h_jags_join_models html
h_jags_write_model html
h_knit_format_func html
h_model_dual_endpoint_beta html
h_model_dual_endpoint_rho html
h_model_dual_endpoint_sigma2betaw html
h_model_dual_endpoint_sigma2w html
h_next_best_eligible_doses html
h_next_best_mg_ci html
h_next_best_mg_doses_at_grid html
h_next_best_mg_plot html
h_next_best_mgsamples_plot html
h_next_best_ncrm_loss_plot html
h_next_best_td_plot html
h_next_best_tdsamples_plot html
h_null_if_na html
h_obtain_dose_grid_range html
h_plot_data_cohort_lines html
h_plot_data_df html
h_plot_doses_tried html
h_plot_simulation_trajectory html
h_prepare_labels html
h_prepare_units html
h_pseudo_sim_fit_summary html
h_pseudo_sim_inverse_dose html
h_quantiles_target_function html
h_rapply html
h_simulations_output_format html
h_slots html
h_summarize_add_stats html
h_test_named_numeric html
h_this_truth html
h_unpack_stopit html
h_validate_combine_results html
h_validate_common_data_slots html
knit_print html
logit html
match_within_tolerance html
maxDose html
maxSize html
mcmc html
minSize html
myBayesLogit html
names-Samples-method html
nextBest html
ngrid html
or-Stopping-Stopping html
or-Stopping-StoppingAny html
or-StoppingAny-Stopping html
pinvGamma html
pipe html
plot-Data-ModelTox-method html
plot-Data html
plot-DataDA-missing-method html
plot-DataDual-ModelEff-method html
plot-DataDual-missing-method html
plot-DualSimulations-missing-method html
plot-DualSimulationsSummary-missing-method
html
plot-GeneralSimulations-missing-method
html
plot-GeneralSimulationsSummary-missing-method
html
plot-PseudoDualFlexiSimulations-missing-method
html
plot-PseudoDualSimulations-missing-method
html
plot-PseudoDualSimulationsSummary-missing-method
html
plot-PseudoSimulationsSummary-missing-method
html
plot-Samples-DALogisticLogNormal-method
html
plot-Samples-DualEndpoint-method html
plot-Samples-GeneralModel-method html
plot-Samples-ModelEff-method html
plot-Samples-ModelTox-method html
plot-SimulationsSummary-missing-method
html
plot.gtable html
plotDualResponses html
plotGain html
positive_number html
printVignette html
prob html
probFunction html
probit html
qinvGamma html
rinvGamma html
saveSample html
set_seed html
show-DualSimulationsSummary-method html
show-GeneralSimulationsSummary-method html
show-PseudoDualSimulationsSummary-method
html
show-PseudoSimulationsSummary-method html
show-SimulationsSummary-method html
simulate-DADesign-method html
simulate-Design-method html
simulate-DesignGrouped-method html
simulate-DualDesign-method html
simulate-DualResponsesDesign-method html
simulate-DualResponsesSamplesDesign-method
html
simulate-RuleDesign-method html
simulate-TDDesign-method html
simulate-TDsamplesDesign-method html
size html
stopTrial html
summary-DualSimulations-method html
summary-GeneralSimulations-method html
summary-PseudoDualFlexiSimulations-method
html
summary-PseudoDualSimulations-method html
summary-PseudoSimulations-method html
summary-Simulations-method html
tidy html
update-Data-method html
update-DataDA-method html
update-DataDual-method html
update-DataOrdinal-method html
update-DataParts-method html
update-ModelPseudo-method html
v_cohort_size html
v_data_objects html
v_design html
v_general_simulations html
v_increments html
v_mcmcoptions_objects html
v_model_objects html
v_model_params html
v_next_best html
v_pseudo_simulations html
v_safety_window html
v_samples_objects html
v_starting_dose html
v_stopping html
windowLength html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (crmPack)