* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘crmPack’ ...
** package ‘crmPack’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Warning in Data(x = 1:2, y = 0:1, doseGrid = 1:2) :
Used default patient IDs!
Warning in Data(x = 1:2, y = 0:1, doseGrid = 1:2) :
Used best guess cohort indices!
Warning in Data(x = 3:4, y = 0:1, doseGrid = 3:4) :
Used default patient IDs!
Warning in Data(x = 3:4, y = 0:1, doseGrid = 3:4) :
Used best guess cohort indices!
Creating a generic function for ‘get’ from package ‘base’ in package ‘crmPack’
** help
*** installing help indices
converting help for package ‘crmPack’
finding HTML links ... done
AllModels-class html
CohortSize-class html
CohortSizeConst-class html
CohortSizeConst html
CohortSizeDLT-class html
CohortSizeDLT html
CohortSizeMax-class html
CohortSizeMax html
CohortSizeMin-class html
CohortSizeMin html
CohortSizeParts-class html
CohortSizeParts html
CohortSizeRange-class html
CohortSizeRange html
Data-class html
Data html
DataDual-class html
DataDual html
DataMixture-class html
DataMixture html
DataParts-class html
DataParts html
Design-class html
Design html
DualDesign-class html
DualDesign html
DualEndpoint-class html
DualEndpoint html
DualEndpointBeta-class html
DualEndpointBeta html
DualEndpointEmax-class html
DualEndpointEmax html
DualEndpointOld-class html
DualEndpointRW-class html
DualEndpointRW html
DualResponsesDesign-class html
DualResponsesDesign html
DualResponsesSamplesDesign-class html
DualResponsesSamplesDesign html
DualSimulations-class html
DualSimulations html
DualSimulationsSummary-class html
EffFlexi-class html
EffFlexi html
Effloglog-class html
Effloglog html
ExpEff html
GeneralData-class html
GeneralModel-class html
GeneralSimulations-class html
GeneralSimulations html
GeneralSimulationsSummary-class html
IncrementMin-class html
IncrementMin html
Increments-class html
IncrementsNumDoseLevels-class html
IncrementsNumDoseLevels html
IncrementsRelative-class html
IncrementsRelative html
IncrementsRelativeDLT-class html
IncrementsRelativeDLT html
IncrementsRelativeParts-class html
IncrementsRelativeParts html
LogisticIndepBeta-class html
LogisticIndepBeta html
LogisticKadane-class html
LogisticKadane html
LogisticLogNormal-class html
LogisticLogNormal html
LogisticLogNormalMixture-class html
LogisticLogNormalMixture html
LogisticLogNormalSub-class html
LogisticLogNormalSub html
LogisticNormal-class html
LogisticNormal html
LogisticNormalFixedMixture-class html
LogisticNormalFixedMixture html
LogisticNormalMixture-class html
LogisticNormalMixture html
McmcOptions-class html
McmcOptions html
MinimalInformative html
Model-class html
ModelEff-class html
ModelPseudo-class html
ModelTox-class html
NextBest-class html
NextBestDualEndpoint-class html
NextBestDualEndpoint html
NextBestMTD-class html
NextBestMTD html
NextBestMaxGain-class html
NextBestMaxGain html
NextBestMaxGainSamples-class html
NextBestMaxGainSamples html
NextBestNCRM-class html
NextBestNCRM html
NextBestTD-class html
NextBestTD html
NextBestTDsamples-class html
NextBestTDsamples html
NextBestThreePlusThree-class html
NextBestThreePlusThree html
ProbitLogNormal-class html
ProbitLogNormal html
PseudoDualFlexiSimulations-class html
PseudoDualFlexiSimulations html
PseudoDualSimulations-class html
PseudoDualSimulations html
PseudoDualSimulationsSummary-class html
PseudoSimulations-class html
PseudoSimulations html
PseudoSimulationsSummary-class html
Quantiles2LogisticNormal html
Report html
RuleDesign-class html
RuleDesign html
Samples-class html
Samples html
Simulations-class html
Simulations html
SimulationsSummary-class html
Stopping-class html
StoppingAll-class html
StoppingAll html
StoppingAny-class html
StoppingAny html
StoppingCohortsNearDose-class html
StoppingCohortsNearDose html
StoppingGstarCIRatio-class html
StoppingGstarCIRatio html
StoppingHighestDose-class html
StoppingHighestDose html
StoppingList-class html
StoppingList html
StoppingMTDdistribution-class html
StoppingMTDdistribution html
StoppingMinCohorts-class html
StoppingMinCohorts html
StoppingMinPatients-class html
StoppingMinPatients html
StoppingPatientsNearDose-class html
StoppingPatientsNearDose html
StoppingTDCIRatio-class html
StoppingTDCIRatio html
StoppingTargetBiomarker-class html
StoppingTargetBiomarker html
StoppingTargetProb-class html
StoppingTargetProb html
TDDesign-class html
TDDesign html
TDsamplesDesign-class html
TDsamplesDesign html
ThreePlusThreeDesign html
Validate html
and-Stopping-Stopping-method html
and-Stopping-StoppingAll-method html
and-StoppingAll-Stopping-method html
approximate html
as.list-GeneralData-method html
biomLevel html
crmPack-package html
crmPackExample html
crmPackHelp html
dinvGamma html
dose html
examine html
fit html
fitGain html
gain html
get-Samples-character-method html
getEff html
getMinInfBeta html
getResultList html
initialize-DualEndpointOld-method html
is.bool html
is.probRange html
is.probability html
is.range html
is.scalar html
is.wholenumber html
joinBodies html
joinModels html
logit html
matchTolerance html
maxDose html
maxSize html
mcmc html
minSize html
multiplot html
myBarplot html
myBayesLogit html
nextBest html
noOverlap html
or-Stopping-Stopping html
or-Stopping-StoppingAny html
or-StoppingAny-Stopping html
pinvGamma html
plot-Data-ModelTox-method html
plot-Data-missing-method html
plot-DataDual-ModelEff-method html
plot-DataDual-missing-method html
plot-DualSimulations-missing-method html
finding level-2 HTML links ... done
plot-DualSimulationsSummary-missing-method
html
plot-GeneralSimulations-missing-method
html
plot-GeneralSimulationsSummary-missing-method
html
plot-PseudoDualFlexiSimulations-missing-method
html
plot-PseudoDualSimulations-missing-method
html
plot-PseudoDualSimulationsSummary-missing-method
html
plot-PseudoSimulationsSummary-missing-method
html
plot-Samples-DualEndpoint-method html
plot-Samples-Model-method html
plot-Samples-ModelEff-method html
plot-Samples-ModelTox-method html
plot-SimulationsSummary-missing-method
html
plot.gtable html
plotDualResponses html
plotGain html
printVignette html
prob html
probit html
qinvGamma html
rinvGamma html
safeInteger html
sampleSize html
saveSample html
setSeed html
show-DualSimulationsSummary-method html
show-GeneralSimulationsSummary-method html
show-PseudoDualSimulationsSummary-method
html
show-PseudoSimulationsSummary-method html
show-SimulationsSummary-method html
simulate-Design-method html
simulate-DualDesign-method html
simulate-DualResponsesDesign-method html
simulate-DualResponsesSamplesDesign-method
html
simulate-RuleDesign-method html
simulate-TDDesign-method html
simulate-TDsamplesDesign-method html
size html
stopTrial html
summary-DualSimulations-method html
summary-GeneralSimulations-method html
summary-PseudoDualFlexiSimulations-method
html
summary-PseudoDualSimulations-method html
summary-PseudoSimulations-method html
summary-Simulations-method html
update-Data-method html
update-DataDual-method html
update-DataParts-method html
update-EffFlexi-method html
update-Effloglog-method html
update-LogisticIndepBeta-method html
writeModel html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (crmPack)