* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘craftgrn’ ...
** this is package ‘craftgrn’ version ‘0.1.7’
** package ‘craftgrn’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-15 (Debian 15.3.0-1) 15.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpiFtK29/R.INSTALL3a3c401e55be3f/craftgrn/src'
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c corr_kernels.cpp -o corr_kernels.o
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c warplda_kernels.cpp -o warplda_kernels.o
g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o craftgrn.so RcppExports.o corr_kernels.o warplda_kernels.o -fopenmp -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpiFtK29/R.INSTALL3a3c401e55be3f/craftgrn/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpiFtK29/R.INSTALL3a3c401e55be3f/craftgrn/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpiFtK29/R.INSTALL3a3c401e55be3f/craftgrn/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-craftgrn/00new/craftgrn/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘craftgrn’
    finding HTML links ... done
    build_module1_qc_report                 html  
    build_module2_qc_report                 html  
    build_module3_qc_report                 html  
    check_predicted_links                   html  
    craftgrn_demo_data_info                 html  
    download_craftgrn_demo_data             html  
    export_predicted_tfbs_bed               html  
    export_tf_target_bedpe                  html  
    load_config                             html  
    load_gene_tss                           html  
    load_omics_data                         html  
    load_predicted_links                    html  
    load_predicted_tfbs                     html  
    load_prep_multiomic_data                html  
    module1_correlate_TF_to_canonical_tfbs
                                            html  
    module1_filter_canonical_bound_tfbs     html  
    module1_predict_full_tfbs               html  
    module1_prepare_tfbs_inputs             html  
    module2_correlate_fp_targets            html  
    module2_correlate_tf_targets            html  
    module2_identify_candidate_links        html  
    module2_link_fp_targets                 html  
    module2_output_predicted_links          html  
    module3_construct_docs                  html  
    module3_extract_topics                  html  
    module3_prepare_differential_links      html  
    module3_train_topic_models              html  
    output_predicted_tfbs                   html  
    predict_tf_targets                      html  
    predict_tfbs                            html  
    query_predicted_links                   html  
    report_direct_tf_tf_regulations         html  
    report_tf_tf_coregulations              html  
    report_top_tf_targets                   html  
    run_app                                 html  
    run_topic_modeling                      html  
    save_omics_data                         html  
    validate_config                         html  
    visualize_differential_grns             html  
    visualize_topic_modeling_results        html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (craftgrn)