* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘countSTAR’ ...
** this is package ‘countSTAR’ version ‘1.0.2’
** package ‘countSTAR’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.3.0-10) 14.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpdJKtPs/R.INSTALL10c75d2c64421c/countSTAR/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c rounded_source.cpp -o rounded_source.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o countSTAR.so RcppExports.o rounded_source.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpdJKtPs/R.INSTALL10c75d2c64421c/countSTAR/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpdJKtPs/R.INSTALL10c75d2c64421c/countSTAR/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpdJKtPs/R.INSTALL10c75d2c64421c/countSTAR/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-countSTAR/00new/countSTAR/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘countSTAR’
    finding HTML links ... done
    BrentMethod                             html  
    a_j                                     html  
    bam_star                                html  
    bart_star                               html  
    bart_star_ispline                       html  
    blm_star                                html  
    blm_star_bnpgibbs                       html  
    blm_star_exact                          html  
    computeTimeRemaining                    html  
    confint.lmstar                          html  
    credBands                               html  
    ergMean                                 html  
    expectation2_gRcpp                      html  
    expectation_gRcpp                       html  
    expectation_identity                    html  
    expectation_log                         html  
    expectation_sqrt                        html  
    g_bc                                    html  
    g_bnp                                   html  
    g_cdf                                   html  
    g_inv_approx                            html  
    g_inv_bc                                html  
    gbm_star                                html  
    genEM_star                              html  
    genMCMC_star                            html  
    genMCMC_star_ispline                    html  
    getEffSize                              html  
    init_bam_orthog                         html  
    init_bam_thin                           html  
    init_lm_gprior                          html  
    init_lm_hs                              html  
    init_lm_ridge                           html  
    init_params_mean                        html  
    interval_gRcpp                          html  
    invlogit                                html  
    lm_star                                 html  
    logLikePointRcpp                        html  
    logLikeRcpp                             html  
    logit                                   html  
    plot_coef                               html  
    plot_fitted                             html  
    plot_pmf                                html  
    pmaxRcpp                                html  
    pminRcpp                                html  
    predict.lmstar                          html  
    pvals                                   html  
    randomForest_star                       html  
    roaches                                 html  
    round_floor                             html  
    rtruncnormRcpp                          html  
    sampleFastGaussian                      html  
    sample_bam_orthog                       html  
    sample_bam_thin                         html  
    sample_lm_gprior                        html  
    sample_lm_hs                            html  
    sample_lm_ridge                         html  
    sample_params_mean                      html  
    simBaS                                  html  
    simulate_nb_friedman                    html  
    simulate_nb_lm                          html  
    splineBasis                             html  
    spline_star                             html  
    spline_star_exact                       html  
    truncnorm_mom                           html  
    uni.slice                               html  
    update_struct                           html  
    warpDLM                                 html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (countSTAR)