* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘cophescan’ ...
** this is package ‘cophescan’ version ‘1.4.2’
** package ‘cophescan’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.3.0-10) 14.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpUDteOA/R.INSTALL222a171f2be3ee/cophescan/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c hier_priors.cpp -o hier_priors.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o cophescan.so RcppExports.o hier_priors.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpUDteOA/R.INSTALL222a171f2be3ee/cophescan/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpUDteOA/R.INSTALL222a171f2be3ee/cophescan/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpUDteOA/R.INSTALL222a171f2be3ee/cophescan/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-cophescan/00new/cophescan/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘cophescan’
    finding HTML links ... done
    Hc.cutoff.fdr                           html  
    adjust_priors                           html  
    average_piks                            html  
    average_piks_list                       html  
    average_posterior_prob                  html  
    average_posterior_prob_list             html  
    combine.bf                              html  
    cophe.bf_bf                             html  
    cophe.hyp.predict                       html  
    cophe.multitrait                        html  
    cophe.prepare.dat.single                html  
    cophe.prepare.dat.susie                 html  
    cophe.single                            html  
    cophe.single.lbf                        html  
    cophe.susie                             html  
    cophe.susie.lbf                         html  
    cophe_heatmap                           html  
    cophe_multi_trait_data                  html  
    cophe_plot                              html  
    cophescan-package                       html  
    get_beta                                html  
    get_posterior_prob                      html  
    hypothesis.priors                       html  
    logd_alpha                              html  
    logd_beta                               html  
    logd_gamma                              html  
    loglik                                  html  
    logpost                                 html  
    logpriors                               html  
    logsum                                  html  
    logsumexp                               html  
    metrop_run                              html  
    multitrait.simplify                     html  
    pars2pik                                html  
    pars_init                               html  
    per.snp.priors                          html  
    piks                                    html  
    plot_trait_manhat                       html  
    posterior_prob                          html  
    prepare_plot_data                       html  
    propose                                 html  
    run_metrop_priors                       html  
    sample_alpha                            html  
    sample_beta                             html  
    sample_gamma                            html  
    summary.cophe                           html  
    target                                  html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cophescan)