* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘comradesOO’ ... ** package ‘comradesOO’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘comradesOO’ finding HTML links ... done clusterComrades html clusterGrangesList html clusterGrangesList_set html clusterNumbers html clusterTableFolded html clusterTableList html clusterTableList_set html compareKnown html compareKnownStructures html comradesDataSet html comradesOO html featureInfo html findBasePairsRNAcoFold2 html findBasePairsRNAfold html findBasePairsRNAfold2 html foldComrades html getAdjacancyMat html getClusterClusterShortRangeWhole html getData html getInteractions html getMatrices html getReverseInteractions html group html hybFiles html hybToGRanges html makeExampleComradesDataSet html matrixList html matrixList_set html plotComparisonArc html plotEnsemblePCA html plotMatrices html plotMatricesAverage html plotStructure html printClustersFast html readNumbers html rnaSize html rnas html sampleChimeras html sampleNames html sampleTable html subsetHybList2 html swapHybs html swapHybs2 html swapHybs3 html topInteracters html topInteractions html topTranscripts html trimClusters html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘comradesOO’ as ‘comradesOO_0.1.1_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (comradesOO)