* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘comradesOO’ ...
** package ‘comradesOO’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘comradesOO’
    finding HTML links ... done
    clusterComrades                         html  
    clusterGrangesList                      html  
    clusterGrangesList_set                  html  
    clusterNumbers                          html  
    clusterTableFolded                      html  
    clusterTableList                        html  
    clusterTableList_set                    html  
    compareKnown                            html  
    compareKnownStructures                  html  
    comradesDataSet                         html  
    comradesOO                              html  
    featureInfo                             html  
    findBasePairsRNAcoFold2                 html  
    findBasePairsRNAfold                    html  
    findBasePairsRNAfold2                   html  
    foldComrades                            html  
    getAdjacancyMat                         html  
    getClusterClusterShortRangeWhole        html  
    getData                                 html  
    getInteractions                         html  
    getMatrices                             html  
    getReverseInteractions                  html  
    group                                   html  
    hybFiles                                html  
    hybToGRanges                            html  
    makeExampleComradesDataSet              html  
    matrixList                              html  
    matrixList_set                          html  
    plotComparisonArc                       html  
    plotEnsemblePCA                         html  
    plotMatrices                            html  
    plotMatricesAverage                     html  
    plotStructure                           html  
    printClustersFast                       html  
    readNumbers                             html  
    rnaSize                                 html  
    rnas                                    html  
    sampleChimeras                          html  
    sampleNames                             html  
    sampleTable                             html  
    subsetHybList2                          html  
    swapHybs                                html  
    swapHybs2                               html  
    swapHybs3                               html  
    topInteracters                          html  
    topInteractions                         html  
    topTranscripts                          html  
    trimClusters                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* creating tarball
packaged installation of ‘comradesOO’ as ‘comradesOO_0.1.1_R_x86_64-pc-linux-gnu.tar.gz’
* DONE (comradesOO)