* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘communication’ ...
** this is package ‘communication’ version ‘0.1’
** package ‘communication’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.3.0-10) 14.3.0’
using C++11
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpG92R5m/R.INSTALL2a20d5614ef60/communication/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c hmm.cpp -o hmm.o
hmm.cpp: In function ‘std::vector<std::vector<unsigned int> > viterbi_cpp(std::vector<arma::Mat<double> >, arma::rowvec, arma::mat)’:
hmm.cpp:1079:29: warning: ‘eT arma::subview_col<eT>::max(arma::uword&) const [with eT = double; arma::uword = unsigned int]’ is deprecated: use .index_max() instead [-Wdeprecated-declarations]
 1079 |     lxis[i].col(Ts[i]-1).max(k_T); // (state mle @ T | xi) -> k_T
      |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo:703,
                 from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
                 from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:32,
                 from hmm.cpp:1:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/subview_meat.hpp:3887:1: note: declared here
 3887 | subview_col<eT>::max(uword& index_of_max_val) const
      | ^~~~~~~~~~~~~~~
hmm.cpp:1084:57: warning: ‘elem_type arma::Base<elem_type, derived>::max(arma::uword&) const [with elem_type = double; derived = arma::eGlue<arma::subview_col<double>, arma::subview_col<double>, arma::eglue_plus>; arma::uword = unsigned int]’ is deprecated: use .index_max() instead [-Wdeprecated-declarations]
 1084 |       (lxis[i].col(t-1) + lGamma.col(revseq.back())).max(k); // (state mle @ t-1 | xi, state @ t) -> k
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo:676:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/Base_meat.hpp:207:1: note: declared here
  207 | Base<elem_type,derived>::max(uword& index_of_max_val) const
      | ^~~~~~~~~~~~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c isSilent.cpp -o isSilent.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c notSilence.cpp -o notSilence.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o communication.so RcppExports.o hmm.o isSilent.o notSilence.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpG92R5m/R.INSTALL2a20d5614ef60/communication/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpG92R5m/R.INSTALL2a20d5614ef60/communication/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpG92R5m/R.INSTALL2a20d5614ef60/communication/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-communication/00new/communication/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘communication’
    finding HTML links ... done
    audio                                   html  
    extractAudioFeatures                    html  
    hmm                                     html  
    llh                                     html  
    standardizeFeatures                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (communication)