* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘cograph’ ... ** this is package ‘cograph’ version ‘1.5.2’ ** package ‘cograph’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘cograph’ finding HTML links ... done COGRAPH_SCALE html COGRAPH_SCALE_LEGACY html CographLayout html CographNetwork html CographTheme html QGRAPH_SCALE html aes-edges html aes-nodes html aes-scales html aggregate_duplicate_edges html arrow_base_midpoint html arrow_head_points html arrow_points html arrow_radius html as_cograph html as_cograph_network html atan2_usr html bezier_points html brain_vertices html build_edge_labels_from_template html cent_to_edge html circle_vertices html cloud_vertices html cograph-main html cograph-package html cograph html compute_adaptive_esize html compute_circular_layout html compute_connectivity_jitter_horizontal html compute_connectivity_jitter_vertical html compute_layout_gephi_fr html compute_polygon_layout html create_edges_df html create_grid_grob html create_nodes_df html cross_vertices html curve_control_point html detect_duplicate_edges html diamond_vertices html draw_arrow_base html draw_brain html draw_chip html draw_chip_node_base html draw_circle html draw_circle_arrow_base html draw_cloud html draw_cross html draw_curve_with_start_segment html draw_curved_arrow_base html draw_curved_edge html draw_curved_edge_base html draw_database html draw_database_node_base html draw_diamond html draw_donut html draw_donut_node_base html draw_donut_pie html draw_donut_pie_node_base html draw_double_donut_pie html draw_double_donut_pie_node_base html draw_edge_label_base html draw_ellipse html draw_gear html draw_heart html draw_hexagon html draw_network html draw_network_node_base html draw_neural html draw_neural_node_base html draw_node_base html draw_node_label_base html draw_open_arrow_base html draw_pentagon html draw_pie html draw_pie_node_base html draw_polygon_donut html draw_polygon_donut_node_base html draw_robot html draw_robot_node_base html draw_self_loop html draw_self_loop_base html draw_square html draw_star html draw_straight_edge html draw_straight_edge_base html draw_svg_shape html draw_svg_shape_base html draw_triangle html edge_endpoint html ellipse_vertices html expand_param html filter_edges_by_weight html find_curve_split_index html fontface_to_numeric html fontface_to_string html format_ci_range html format_edge_label_template html format_pvalue html from_qgraph html from_tna html gear_vertices html get_donut_base_vertices html get_edge_label_position html get_edge_order html get_edges html get_labels html get_layout html get_node_order html get_nodes html get_scale_constants html get_shape html get_shape_vertices html get_significance_stars html get_svg_shape html get_template_from_style html get_theme html get_x_scale html get_y_scale html globals html handle_deprecated_param html has_package html heart_vertices html hexagon_vertices html in_to_usr_x html in_to_usr_y html init_registries html input-edgelist html input-igraph html input-matrix html input-parse html input-qgraph html input-statnet html input-tna html inset_polygon_vertices html is_cograph_network html is_cograph_theme html is_directed html is_symmetric_matrix html layout-circle html layout-groups html layout-oval html layout-registry html layout-spring html layout_bipartite_fn html layout_circle html layout_custom_fn html layout_gephi_fr html layout_grid_fn html layout_groups html layout_oval html layout_random_fn html layout_spring html layout_star_fn html list_layouts html list_palettes html list_shapes html list_svg_shapes html list_themes html map_edge_colors html map_node_colors html map_qgraph_lty html map_qgraph_shape html methods-plot html methods-print html n_edges html n_nodes html nodes html offset_point html output-save html palette_blues html palette_colorblind html palette_diverging html palette_pastel html palette_rainbow html palette_reds html palette_viridis html palettes html parse_input html parse_svg html pentagon_vertices html perp_mid html plot.cograph_network html plot_htna html plot_mlna html plot_mtna html plot_tna html point_angle html point_distance html point_on_circle html print.cograph_network html qgraph_arrow_size html qgraph_cent2edge html qgraph_cent_to_edge_simple html qgraph_default_esize html qgraph_default_vsize html qgraph_norm_curve html qgraph_plot_info html qgraph_scale_edge_widths html qgraph_vsize_to_user html rectangle_vertices html recycle_to_length html register_builtin_layouts html register_builtin_palettes html register_builtin_shapes html register_builtin_themes html register_layout html register_shape html register_svg_shape html register_theme html regular_polygon_vertices html render-edges html render-ggplot html render-grid html render-nodes html render_edge_labels_grid html render_edges_grid html render_edges_splot html render_legend_grid html render_legend_splot html render_node_labels_grid html render_nodes_base html render_nodes_grid html render_nodes_splot html rescale_layout html resolve_aesthetic html resolve_curvatures html resolve_edge_colors html resolve_edge_labels html resolve_edge_widths html resolve_label_sizes html resolve_labels html resolve_loop_rotation html resolve_node_colors html resolve_node_sizes html resolve_shapes html resolve_stars html scale-constants html scale_alpha html scale_color html scale_color_discrete html scale_edge_widths html scale_edge_widths_simple html scale_node_sizes html scale_size html scale_width html set_edges html set_layout html set_nodes html shapes-basic html shapes-registry html shapes-special html shapes-svg html shorten_edge_for_arrow html sn_edges html sn_ggplot html sn_layout html sn_nodes html sn_palette html sn_save html sn_save_ggplot html sn_theme html sonplot-qgraph-geometry html soplot html splot-arrows html splot-edges html splot-geometry html splot-labels html splot-nodes html splot-params html splot-polygons html splot html splot_angle html splot_distance html square_vertices html star_vertices html summary.cograph_network html theme_cograph_classic html theme_cograph_colorblind html theme_cograph_dark html theme_cograph_gray html theme_cograph_minimal html theme_cograph_nature html theme_cograph_viridis html themes-builtin html themes-registry html tna_color_palette html triangle_vertices html unregister_svg_shape html usr_to_in_x html usr_to_in_y html utils-colors html utils-deprecation html utils-geometry html utils-validation html validate_choice html validate_color html validate_length html validate_network html validate_range html zzz html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cograph)