* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘cograph’ ...
** this is package ‘cograph’ version ‘2.0.0’
** package ‘cograph’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘cograph’
finding HTML links ... done
COGRAPH_SCALE html
COGRAPH_SCALE_LEGACY html
CographLayout html
CographNetwork html
CographTheme html
QGRAPH_SCALE html
abbrev_label html
aes-edges html
aes-nodes html
aes-scales html
aggregate_duplicate_edges html
aggregate_layers html
aggregate_weights html
arrow_base_midpoint html
arrow_head_points html
arrow_points html
arrow_radius html
as_cograph html
as_mcml html
as_tna html
atan2_usr html
bezier_points html
brain_vertices html
build_edge_labels_from_template html
build_mcml html
cent_to_edge html
centrality html
centrality_alpha html
centrality_authority html
centrality_betweenness html
centrality_closeness html
centrality_constraint html
centrality_coreness html
centrality_current_flow_betweenness html
centrality_current_flow_closeness html
centrality_degree html
centrality_diffusion html
centrality_eccentricity html
centrality_eigenvector html
centrality_harmonic html
centrality_kreach html
centrality_laplacian html
centrality_leverage html
centrality_load html
centrality_pagerank html
centrality_percolation html
centrality_power html
centrality_strength html
centrality_subgraph html
centrality_transitivity html
centrality_voterank html
check_duplicate_edges html
circle_vertices html
cloud_vertices html
cluster_quality html
cluster_significance html
cluster_summary html
cograph-main html
cograph-package html
cograph html
color_communities html
communities html
community_consensus html
community_edge_betweenness html
community_fast_greedy html
community_fluid html
community_infomap html
community_label_propagation html
community_leading_eigenvector html
community_leiden html
community_louvain html
community_optimal html
community_sizes html
community_spinglass html
community_walktrap html
compare_communities html
compute_adaptive_esize html
compute_circular_layout html
compute_connectivity_jitter_horizontal
html
compute_connectivity_jitter_vertical html
compute_edge_curvatures html
compute_layout_gephi_fr html
compute_plot_limits html
compute_polygon_layout html
create_edges_df html
create_grid_grob html
create_nodes_df html
cross_vertices html
curve_control_point html
degree_distribution html
detect_communities html
detect_duplicate_edges html
diamond_vertices html
disparity html
disparity_filter html
dot-add_cluster_borders html
dot-add_cluster_labels html
dot-add_heatmap_values html
dot-as_mcml html
dot-auto_detect_clusters html
dot-build_cluster_lookup html
dot-build_from_transitions html
dot-build_heatmap_base html
dot-build_mcml_edgelist html
dot-build_mcml_sequence html
dot-build_ml_cells html
dot-build_ml_connections html
dot-build_ml_labels html
dot-build_ml_shells html
dot-compute_modularity html
dot-create_cograph_network html
dot-decode_tna_data html
dot-detect_mcml_input html
dot-disparity_filter_matrix html
dot-draw_intra_arc html
dot-draw_intra_group_edges html
dot-extract_inits html
dot-extract_ml_layers html
dot-extract_weights html
dot-group_tna_to_mcml html
dot-heatmap_theme html
dot-matrix_to_long html
dot-normalize_clusters html
dot-plot_compare_all_pairs html
dot-plot_heatmap_clustered html
dot-plot_heatmap_group_tna html
dot-plot_heatmap_single html
dot-process_weights html
dot-resolve_colors html
dot-resolve_ml_colors html
dot-resolve_weights html
dot-tna_style_defaults html
dot-transform_to_plane html
dot-translate_qgraph_dots html
dot-wrap_communities html
draw_arrow_base html
draw_brain html
draw_chip html
draw_chip_node_base html
draw_circle html
draw_circle_arrow_base html
draw_cloud html
draw_cross html
draw_curve_with_start_segment html
draw_curved_arrow_base html
draw_curved_edge html
draw_curved_edge_base html
draw_database html
draw_database_node_base html
draw_diamond html
draw_donut html
draw_donut_node_base html
draw_donut_pie html
draw_donut_pie_node_base html
draw_double_donut_pie html
draw_double_donut_pie_node_base html
draw_edge_label_base html
draw_ellipse html
draw_gear html
draw_heart html
draw_hexagon html
draw_network html
draw_network_node_base html
draw_neural html
draw_neural_node_base html
draw_node_base html
draw_node_label_base html
draw_open_arrow_base html
draw_pentagon html
draw_pie html
draw_pie_node_base html
draw_polygon_donut html
draw_polygon_donut_node_base html
draw_polygon_donut_pie_node_base html
draw_robot html
draw_robot_node_base html
draw_self_loop html
draw_self_loop_base html
draw_square html
draw_star html
draw_straight_edge html
draw_straight_edge_base html
draw_svg_shape html
draw_svg_shape_base html
draw_triangle html
edge_centrality html
edge_endpoint html
ellipse_vertices html
expand_param html
extract_motifs html
extract_triads html
filter_edges html
filter_edges_by_weight html
filter_nodes html
find_curve_split_index html
fontface_to_numeric html
fontface_to_string html
format_ci_range html
format_edge_label_template html
format_pvalue html
from_qgraph html
from_tna html
gear_vertices html
get_data html
get_donut_base_vertices html
get_edge_label_position html
get_edge_list html
get_edge_order html
get_edges html
get_groups html
get_labels html
get_layout html
get_meta html
get_node_order html
get_nodes html
get_scale_constants html
get_shape html
get_shape_vertices html
get_significance_stars html
get_source html
get_svg_shape html
get_template_from_style html
get_theme html
get_x_scale html
get_y_scale html
ggplot_robustness html
globals html
hai_datasets html
handle_deprecated_param html
heart_vertices html
hexagon_vertices html
in_to_usr_x html
in_to_usr_y html
init_registries html
input-edgelist html
input-igraph html
input-matrix html
input-parse html
input-qgraph html
input-statnet html
input-tna html
inset_polygon_vertices html
is_cograph_network html
is_cograph_theme html
is_directed html
is_symmetric_matrix html
is_tna_network html
layer_degree_correlation html
layer_similarity html
layer_similarity_matrix html
layout-circle html
layout-groups html
layout-oval html
layout-registry html
layout-spring html
layout_circle html
layout_gephi_fr html
layout_groups html
layout_oval html
layout_spring html
list_layouts html
list_palettes html
list_shapes html
list_svg_shapes html
list_themes html
map_edge_colors html
map_node_colors html
map_qgraph_lty html
map_qgraph_shape html
mcml html
membership.cograph_communities html
methods-plot html
methods-print html
modularity.cograph_communities html
motif_census html
motifs html
n_communities html
n_edges html
n_nodes html
network_bridges html
network_clique_size html
network_cut_vertices html
network_girth html
network_global_efficiency html
network_local_efficiency html
network_radius html
network_rich_club html
network_small_world html
network_summary html
network_vertex_connectivity html
nodes html
offset_point html
output-save html
overlay_communities html
palette_blues html
palette_colorblind html
palette_diverging html
palette_pastel html
palette_rainbow html
palette_reds html
palette_viridis html
palettes html
parse_input html
parse_svg html
pentagon_vertices html
perp_mid html
plot-bootstrap html
plot-compare html
plot-heatmap html
plot-nestimate html
plot-permutation html
plot-transitions html
plot.cograph_cluster_significance html
plot.cograph_communities html
plot.cograph_motif_analysis html
plot.cograph_motifs html
plot.cograph_network html
plot.tna_disparity html
plot_alluvial html
plot_bootstrap_forest html
plot_chord html
plot_compare html
plot_comparison_heatmap html
plot_edge_diff_forest html
plot_group_permutation html
plot_heatmap html
plot_htna html
plot_mcml html
plot_mixed_network html
plot_ml_heatmap html
plot_mlna html
plot_mtna html
plot_netobject_group html
plot_netobject_ml html
plot_permutation html
plot_robustness html
plot_simplicial html
plot_tna html
plot_trajectories html
plot_transitions html
point_angle html
point_distance html
point_on_circle html
print.cograph_communities html
print.cograph_network html
qgraph_arrow_size html
qgraph_cent2edge html
qgraph_cent_to_edge_simple html
qgraph_default_esize html
qgraph_default_vsize html
qgraph_norm_curve html
qgraph_plot_info html
qgraph_scale_edge_widths html
qgraph_vsize_to_user html
rectangle_vertices html
recycle_to_length html
register_builtin_layouts html
register_builtin_palettes html
register_builtin_shapes html
register_builtin_themes html
register_layout html
register_shape html
register_svg_shape html
register_theme html
regular_polygon_vertices html
render-edges html
render-ggplot html
render-grid html
render-nodes html
render_edge_labels_grid html
render_edges_base html
render_edges_grid html
render_edges_splot html
render_legend_grid html
render_legend_splot html
render_node_labels_grid html
render_nodes_base html
render_nodes_grid html
render_nodes_splot html
rescale_layout html
resolve_aesthetic html
resolve_centrality_sizes html
resolve_donut_params html
resolve_edge_colors html
resolve_edge_labels html
resolve_edge_styles html
resolve_edge_widths html
resolve_label_sizes html
resolve_labels html
resolve_loop_rotation html
resolve_node_colors html
resolve_node_sizes html
resolve_shapes html
resolve_stars html
robustness html
robustness_auc html
robustness_edge_attack html
robustness_summary html
robustness_vertex_attack html
scale-constants html
scale_alpha html
scale_color html
scale_color_discrete html
scale_edge_widths html
scale_edge_widths_simple html
scale_node_sizes html
scale_size html
scale_width html
select_bridges html
select_component html
select_edges html
select_edges_between html
select_edges_involving html
select_neighbors html
select_nodes html
select_top html
select_top_edges html
set_edges html
set_groups html
set_layout html
set_nodes html
shapes-basic html
shapes-registry html
shapes-special html
shapes-svg html
shorten_edge_for_arrow html
simplify html
sn_edges html
sn_ggplot html
sn_layout html
sn_nodes html
sn_palette html
sn_save html
sn_save_ggplot html
sn_theme html
sonplot-qgraph-geometry html
soplot html
splot-arrows html
splot-edges html
splot-geometry html
splot-labels html
splot-nodes html
splot-params html
splot-polygons html
splot html
splot.boot_glasso html
splot.net_bootstrap html
splot.net_permutation html
splot.netobject html
splot.tna_bootstrap html
splot.tna_disparity html
splot.wtna_mixed html
splot_angle html
square_vertices html
star_vertices html
student_interactions html
subgraphs html
summarize_network html
summary.cograph_network html
supra_adjacency html
supra_interlayer html
supra_layer html
theme_cograph_classic html
theme_cograph_colorblind html
theme_cograph_dark html
theme_cograph_gray html
theme_cograph_minimal html
theme_cograph_nature html
theme_cograph_viridis html
themes-builtin html
themes-registry html
tna_color_palette html
to_data_frame html
to_igraph html
to_matrix html
to_network html
triad_census html
triangle_vertices html
unregister_svg_shape html
usr_to_in_x html
usr_to_in_y html
utils-colors html
utils-deprecation html
utils-geometry html
utils-globals html
utils-validation html
validate_choice html
validate_color html
validate_length html
validate_network html
validate_range html
verify_with_igraph html
zzz html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cograph)