* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘cograph’ ...
** this is package ‘cograph’ version ‘1.5.2’
** package ‘cograph’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘cograph’
    finding HTML links ... done
    COGRAPH_SCALE                           html  
    COGRAPH_SCALE_LEGACY                    html  
    CographLayout                           html  
    CographNetwork                          html  
    CographTheme                            html  
    QGRAPH_SCALE                            html  
    aes-edges                               html  
    aes-nodes                               html  
    aes-scales                              html  
    aggregate_duplicate_edges               html  
    arrow_base_midpoint                     html  
    arrow_head_points                       html  
    arrow_points                            html  
    arrow_radius                            html  
    as_cograph                              html  
    as_cograph_network                      html  
    atan2_usr                               html  
    bezier_points                           html  
    brain_vertices                          html  
    build_edge_labels_from_template         html  
    cent_to_edge                            html  
    circle_vertices                         html  
    cloud_vertices                          html  
    cograph-main                            html  
    cograph-package                         html  
    cograph                                 html  
    compute_adaptive_esize                  html  
    compute_circular_layout                 html  
    compute_connectivity_jitter_horizontal
                                            html  
    compute_connectivity_jitter_vertical    html  
    compute_layout_gephi_fr                 html  
    compute_polygon_layout                  html  
    create_edges_df                         html  
    create_grid_grob                        html  
    create_nodes_df                         html  
    cross_vertices                          html  
    curve_control_point                     html  
    detect_duplicate_edges                  html  
    diamond_vertices                        html  
    draw_arrow_base                         html  
    draw_brain                              html  
    draw_chip                               html  
    draw_chip_node_base                     html  
    draw_circle                             html  
    draw_circle_arrow_base                  html  
    draw_cloud                              html  
    draw_cross                              html  
    draw_curve_with_start_segment           html  
    draw_curved_arrow_base                  html  
    draw_curved_edge                        html  
    draw_curved_edge_base                   html  
    draw_database                           html  
    draw_database_node_base                 html  
    draw_diamond                            html  
    draw_donut                              html  
    draw_donut_node_base                    html  
    draw_donut_pie                          html  
    draw_donut_pie_node_base                html  
    draw_double_donut_pie                   html  
    draw_double_donut_pie_node_base         html  
    draw_edge_label_base                    html  
    draw_ellipse                            html  
    draw_gear                               html  
    draw_heart                              html  
    draw_hexagon                            html  
    draw_network                            html  
    draw_network_node_base                  html  
    draw_neural                             html  
    draw_neural_node_base                   html  
    draw_node_base                          html  
    draw_node_label_base                    html  
    draw_open_arrow_base                    html  
    draw_pentagon                           html  
    draw_pie                                html  
    draw_pie_node_base                      html  
    draw_polygon_donut                      html  
    draw_polygon_donut_node_base            html  
    draw_robot                              html  
    draw_robot_node_base                    html  
    draw_self_loop                          html  
    draw_self_loop_base                     html  
    draw_square                             html  
    draw_star                               html  
    draw_straight_edge                      html  
    draw_straight_edge_base                 html  
    draw_svg_shape                          html  
    draw_svg_shape_base                     html  
    draw_triangle                           html  
    edge_endpoint                           html  
    ellipse_vertices                        html  
    expand_param                            html  
    filter_edges_by_weight                  html  
    find_curve_split_index                  html  
    fontface_to_numeric                     html  
    fontface_to_string                      html  
    format_ci_range                         html  
    format_edge_label_template              html  
    format_pvalue                           html  
    from_qgraph                             html  
    from_tna                                html  
    gear_vertices                           html  
    get_donut_base_vertices                 html  
    get_edge_label_position                 html  
    get_edge_order                          html  
    get_edges                               html  
    get_labels                              html  
    get_layout                              html  
    get_node_order                          html  
    get_nodes                               html  
    get_scale_constants                     html  
    get_shape                               html  
    get_shape_vertices                      html  
    get_significance_stars                  html  
    get_svg_shape                           html  
    get_template_from_style                 html  
    get_theme                               html  
    get_x_scale                             html  
    get_y_scale                             html  
    globals                                 html  
    handle_deprecated_param                 html  
    has_package                             html  
    heart_vertices                          html  
    hexagon_vertices                        html  
    in_to_usr_x                             html  
    in_to_usr_y                             html  
    init_registries                         html  
    input-edgelist                          html  
    input-igraph                            html  
    input-matrix                            html  
    input-parse                             html  
    input-qgraph                            html  
    input-statnet                           html  
    input-tna                               html  
    inset_polygon_vertices                  html  
    is_cograph_network                      html  
    is_cograph_theme                        html  
    is_directed                             html  
    is_symmetric_matrix                     html  
    layout-circle                           html  
    layout-groups                           html  
    layout-oval                             html  
    layout-registry                         html  
    layout-spring                           html  
    layout_bipartite_fn                     html  
    layout_circle                           html  
    layout_custom_fn                        html  
    layout_gephi_fr                         html  
    layout_grid_fn                          html  
    layout_groups                           html  
    layout_oval                             html  
    layout_random_fn                        html  
    layout_spring                           html  
    layout_star_fn                          html  
    list_layouts                            html  
    list_palettes                           html  
    list_shapes                             html  
    list_svg_shapes                         html  
    list_themes                             html  
    map_edge_colors                         html  
    map_node_colors                         html  
    map_qgraph_lty                          html  
    map_qgraph_shape                        html  
    methods-plot                            html  
    methods-print                           html  
    n_edges                                 html  
    n_nodes                                 html  
    nodes                                   html  
    offset_point                            html  
    output-save                             html  
    palette_blues                           html  
    palette_colorblind                      html  
    palette_diverging                       html  
    palette_pastel                          html  
    palette_rainbow                         html  
    palette_reds                            html  
    palette_viridis                         html  
    palettes                                html  
    parse_input                             html  
    parse_svg                               html  
    pentagon_vertices                       html  
    perp_mid                                html  
    plot.cograph_network                    html  
    plot_htna                               html  
    plot_mlna                               html  
    plot_mtna                               html  
    plot_tna                                html  
    point_angle                             html  
    point_distance                          html  
    point_on_circle                         html  
    print.cograph_network                   html  
    qgraph_arrow_size                       html  
    qgraph_cent2edge                        html  
    qgraph_cent_to_edge_simple              html  
    qgraph_default_esize                    html  
    qgraph_default_vsize                    html  
    qgraph_norm_curve                       html  
    qgraph_plot_info                        html  
    qgraph_scale_edge_widths                html  
    qgraph_vsize_to_user                    html  
    rectangle_vertices                      html  
    recycle_to_length                       html  
    register_builtin_layouts                html  
    register_builtin_palettes               html  
    register_builtin_shapes                 html  
    register_builtin_themes                 html  
    register_layout                         html  
    register_shape                          html  
    register_svg_shape                      html  
    register_theme                          html  
    regular_polygon_vertices                html  
    render-edges                            html  
    render-ggplot                           html  
    render-grid                             html  
    render-nodes                            html  
    render_edge_labels_grid                 html  
    render_edges_grid                       html  
    render_edges_splot                      html  
    render_legend_grid                      html  
    render_legend_splot                     html  
    render_node_labels_grid                 html  
    render_nodes_base                       html  
    render_nodes_grid                       html  
    render_nodes_splot                      html  
    rescale_layout                          html  
    resolve_aesthetic                       html  
    resolve_curvatures                      html  
    resolve_edge_colors                     html  
    resolve_edge_labels                     html  
    resolve_edge_widths                     html  
    resolve_label_sizes                     html  
    resolve_labels                          html  
    resolve_loop_rotation                   html  
    resolve_node_colors                     html  
    resolve_node_sizes                      html  
    resolve_shapes                          html  
    resolve_stars                           html  
    scale-constants                         html  
    scale_alpha                             html  
    scale_color                             html  
    scale_color_discrete                    html  
    scale_edge_widths                       html  
    scale_edge_widths_simple                html  
    scale_node_sizes                        html  
    scale_size                              html  
    scale_width                             html  
    set_edges                               html  
    set_layout                              html  
    set_nodes                               html  
    shapes-basic                            html  
    shapes-registry                         html  
    shapes-special                          html  
    shapes-svg                              html  
    shorten_edge_for_arrow                  html  
    sn_edges                                html  
    sn_ggplot                               html  
    sn_layout                               html  
    sn_nodes                                html  
    sn_palette                              html  
    sn_save                                 html  
    sn_save_ggplot                          html  
    sn_theme                                html  
    sonplot-qgraph-geometry                 html  
    soplot                                  html  
    splot-arrows                            html  
    splot-edges                             html  
    splot-geometry                          html  
    splot-labels                            html  
    splot-nodes                             html  
    splot-params                            html  
    splot-polygons                          html  
    splot                                   html  
    splot_angle                             html  
    splot_distance                          html  
    square_vertices                         html  
    star_vertices                           html  
    summary.cograph_network                 html  
    theme_cograph_classic                   html  
    theme_cograph_colorblind                html  
    theme_cograph_dark                      html  
    theme_cograph_gray                      html  
    theme_cograph_minimal                   html  
    theme_cograph_nature                    html  
    theme_cograph_viridis                   html  
    themes-builtin                          html  
    themes-registry                         html  
    tna_color_palette                       html  
    triangle_vertices                       html  
    unregister_svg_shape                    html  
    usr_to_in_x                             html  
    usr_to_in_y                             html  
    utils-colors                            html  
    utils-deprecation                       html  
    utils-geometry                          html  
    utils-validation                        html  
    validate_choice                         html  
    validate_color                          html  
    validate_length                         html  
    validate_network                        html  
    validate_range                          html  
    zzz                                     html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cograph)