* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘cograph’ ...
** this is package ‘cograph’ version ‘2.4.4’
** package ‘cograph’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘cograph’
    finding HTML links ... done
    CographLayout                           html  
    CographNetwork                          html  
    CographTheme                            html  
    abbrev_label                            html  
    aes-edges                               html  
    aes-nodes                               html  
    aggregate_layers                        html  
    aggregate_weights                       html  
    as_cograph                              html  
    as_mcml                                 html  
    as_tna                                  html  
    assortativity                           html  
    assortativity_attribute                 html  
    centrality                              html  
    centrality_alpha                        html  
    centrality_authority                    html  
    centrality_average_distance             html  
    centrality_barycenter                   html  
    centrality_betweenness                  html  
    centrality_bottleneck                   html  
    centrality_bridging                     html  
    centrality_brokerage_coordinator        html  
    centrality_brokerage_gatekeeper         html  
    centrality_brokerage_itinerant          html  
    centrality_brokerage_liaison            html  
    centrality_brokerage_representative     html  
    centrality_centroid                     html  
    centrality_closeness                    html  
    centrality_closeness_vitality           html  
    centrality_clusterrank                  html  
    centrality_communicability              html  
    centrality_communicability_betweenness
                                            html  
    centrality_constraint                   html  
    centrality_coreness                     html  
    centrality_cross_clique                 html  
    centrality_current_flow_betweenness     html  
    centrality_current_flow_closeness       html  
    centrality_dangalchev                   html  
    centrality_decay                        html  
    centrality_degree                       html  
    centrality_diffusion                    html  
    centrality_diversity                    html  
    centrality_dmnc                         html  
    centrality_eccentricity                 html  
    centrality_effective_size               html  
    centrality_eigenvector                  html  
    centrality_entropy                      html  
    centrality_expected                     html  
    centrality_expected_influence_1         html  
    centrality_expected_influence_2         html  
    centrality_flow_betweenness             html  
    centrality_gateway                      html  
    centrality_generalized_closeness        html  
    centrality_gilschmidt                   html  
    centrality_harary                       html  
    centrality_harmonic                     html  
    centrality_hubbell                      html  
    centrality_information                  html  
    centrality_integration                  html  
    centrality_katz                         html  
    centrality_kreach                       html  
    centrality_lac                          html  
    centrality_laplacian                    html  
    centrality_leaderrank                   html  
    centrality_leverage                     html  
    centrality_lin                          html  
    centrality_load                         html  
    centrality_lobby                        html  
    centrality_local_bridging               html  
    centrality_markov                       html  
    centrality_mnc                          html  
    centrality_pagerank                     html  
    centrality_pairwisedis                  html  
    centrality_participation                html  
    centrality_percolation                  html  
    centrality_power                        html  
    centrality_prestige_domain              html  
    centrality_prestige_domain_proximity    html  
    centrality_radiality                    html  
    centrality_random_walk                  html  
    centrality_reaching_local               html  
    centrality_residual_closeness           html  
    centrality_salsa                        html  
    centrality_semilocal                    html  
    centrality_strength                     html  
    centrality_stress                       html  
    centrality_subgraph                     html  
    centrality_topological_coefficient      html  
    centrality_transitivity                 html  
    centrality_voterank                     html  
    centrality_wiener                       html  
    centrality_within_module_z              html  
    centralization                          html  
    cluster_quality                         html  
    cluster_significance                    html  
    cograph-main                            html  
    cograph-package                         html  
    cograph                                 html  
    color_communities                       html  
    communities                             html  
    community_consensus                     html  
    community_edge_betweenness              html  
    community_fast_greedy                   html  
    community_fluid                         html  
    community_infomap                       html  
    community_label_propagation             html  
    community_leading_eigenvector           html  
    community_leiden                        html  
    community_louvain                       html  
    community_optimal                       html  
    community_sizes                         html  
    community_spinglass                     html  
    community_walktrap                      html  
    compare_communities                     html  
    core_periphery                          html  
    csum                                    html  
    degree_distribution                     html  
    detect_communities                      html  
    disparity_filter                        html  
    dispersion                              html  
    dyad_census                             html  
    edge_centrality                         html  
    edge_reciprocity                        html  
    ego_networks                            html  
    estrada_index                           html  
    extract_motifs                          html  
    extract_triads                          html  
    filter_edges                            html  
    filter_nodes                            html  
    fit_degree_distribution                 html  
    from_qgraph                             html  
    from_tna                                html  
    get_data                                html  
    get_edge_list                           html  
    get_edges                               html  
    get_groups                              html  
    get_labels                              html  
    get_layout                              html  
    get_meta                                html  
    get_nodes                               html  
    get_shape                               html  
    get_source                              html  
    get_theme                               html  
    ggplot_robustness                       html  
    group_centrality                        html  
    hai_datasets                            html  
    input-edgelist                          html  
    input-igraph                            html  
    input-matrix                            html  
    input-qgraph                            html  
    input-statnet                           html  
    input-tna                               html  
    is_bipartite                            html  
    is_directed                             html  
    is_tna_network                          html  
    k_shortest_paths                        html  
    layer_degree_correlation                html  
    layer_similarity                        html  
    layer_similarity_matrix                 html  
    layout-circle                           html  
    layout-groups                           html  
    layout-oval                             html  
    layout-spring                           html  
    layout-target-saqr                      html  
    layout_circle                           html  
    layout_groups                           html  
    layout_oval                             html  
    layout_saqr                             html  
    layout_spring                           html  
    layout_target                           html  
    list_layouts                            html  
    list_palettes                           html  
    list_shapes                             html  
    list_svg_shapes                         html  
    list_themes                             html  
    mcml                                    html  
    membership                              html  
    methods-plot                            html  
    methods-print                           html  
    motif_census                            html  
    motifs                                  html  
    n_communities                           html  
    n_edges                                 html  
    n_nodes                                 html  
    neighborhood_overlap                    html  
    network_bridges                         html  
    network_clique_size                     html  
    network_cut_vertices                    html  
    network_girth                           html  
    network_global_efficiency               html  
    network_local_efficiency                html  
    network_radius                          html  
    network_rich_club                       html  
    network_small_world                     html  
    network_summary                         html  
    network_vertex_connectivity             html  
    nodes                                   html  
    output-save                             html  
    overlay_communities                     html  
    palette_blues                           html  
    palette_colorblind                      html  
    palette_diverging                       html  
    palette_pastel                          html  
    palette_rainbow                         html  
    palette_reds                            html  
    palette_viridis                         html  
    palettes                                html  
    panel_layout                            html  
    plot.cograph_cluster_significance       html  
    plot.cograph_communities                html  
    plot.cograph_core_periphery             html  
    plot.cograph_degree_fit                 html  
    plot.cograph_motif_analysis             html  
    plot.cograph_motifs                     html  
    plot.cograph_network                    html  
    plot.cograph_rich_club                  html  
    plot.cograph_vulnerability              html  
    plot.tna_disparity                      html  
    plot_alluvial                           html  
    plot_bootstrap_forest                   html  
    plot_centrality                         html  
    plot_centrality_compare                 html  
    plot_centrality_distribution            html  
    plot_centrality_heatmap                 html  
    plot_chord                              html  
    plot_compare                            html  
    plot_comparison_heatmap                 html  
    plot_degree_correlation                 html  
    plot_difference                         html  
    plot_edge_diff_forest                   html  
    plot_edge_weights                       html  
    plot_group_permutation                  html  
    plot_heatmap                            html  
    plot_htna                               html  
    plot_mcml                               html  
    plot_mixed_network                      html  
    plot_ml_heatmap                         html  
    plot_mlna                               html  
    plot_motifs                             html  
    plot_mtna                               html  
    plot_net_bootstrap_group                html  
    plot_net_stability                      html  
    plot_netobject_group                    html  
    plot_netobject_ml                       html  
    plot_network_evolution                  html  
    plot_permutation                        html  
    plot_robustness                         html  
    plot_simplicial                         html  
    plot_temporal                           html  
    plot_tna                                html  
    plot_trajectories                       html  
    plot_transitions                        html  
    print.cograph_communities               html  
    print.cograph_degree_fit                html  
    print.cograph_network                   html  
    project_bipartite                       html  
    reaching_global                         html  
    register_layout                         html  
    register_shape                          html  
    register_svg_shape                      html  
    register_theme                          html  
    render-ggplot                           html  
    render-grid                             html  
    rich_club                               html  
    rich_club_local                         html  
    robustness                              html  
    robustness_auc                          html  
    robustness_summary                      html  
    select_bridges                          html  
    select_component                        html  
    select_edges                            html  
    select_edges_between                    html  
    select_edges_involving                  html  
    select_neighbors                        html  
    select_nodes                            html  
    select_top                              html  
    select_top_edges                        html  
    set_edges                               html  
    set_groups                              html  
    set_layout                              html  
    set_nodes                               html  
    shortest_paths                          html  
    simmelian_strength                      html  
    simplify                                html  
    sn_edges                                html  
    sn_ggplot                               html  
    sn_layout                               html  
    sn_nodes                                html  
    sn_palette                              html  
    sn_save                                 html  
    sn_save_ggplot                          html  
    sn_theme                                html  
    soplot                                  html  
    splot                                   html  
    splot.tna_bootstrap                     html  
    splot.tna_disparity                     html  
    student_interactions                    html  
    subgraphs                               html  
    summarize_clusters                      html  
    summarize_network                       html  
    summary.cograph_network                 html  
    supra_adjacency                         html  
    supra_interlayer                        html  
    supra_layer                             html  
    theme_cograph_classic                   html  
    theme_cograph_colorblind                html  
    theme_cograph_dark                      html  
    theme_cograph_gray                      html  
    theme_cograph_minimal                   html  
    theme_cograph_nature                    html  
    theme_cograph_viridis                   html  
    themes-builtin                          html  
    themes-registry                         html  
    to_data_frame                           html  
    to_igraph                               html  
    to_matrix                               html  
    to_network                              html  
    triad_census                            html  
    trophic_incoherence                     html  
    unregister_svg_shape                    html  
    verify_with_igraph                      html  
    vulnerability                           html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cograph)