Install log for 'coala'

* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘coala’ ...
** package ‘coala’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’
make[1]: Entering directory '/tmp/RtmpOCsKhy/R.INSTALL829a919e182f7/coala/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c parse_ms_output.cpp -o parse_ms_output.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c parse_seqgen_output.cpp -o parse_seqgen_output.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c parse_trees.cpp -o parse_trees.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c seg_sites.cpp -o seg_sites.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c stat_fpc.cpp -o stat_fpc.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c stat_jsfs.cpp -o stat_jsfs.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c stat_mcmf.cpp -o stat_mcmf.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c stat_nucleotide_div.cpp -o stat_nucleotide_div.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c unphase_segsites.cpp -o unphase_segsites.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o coala.so RcppExports.o parse_ms_output.o parse_seqgen_output.o parse_trees.o seg_sites.o stat_fpc.o stat_jsfs.o stat_mcmf.o stat_nucleotide_div.o unphase_segsites.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpOCsKhy/R.INSTALL829a919e182f7/coala/src'
make[1]: Entering directory '/tmp/RtmpOCsKhy/R.INSTALL829a919e182f7/coala/src'
make[1]: Leaving directory '/tmp/RtmpOCsKhy/R.INSTALL829a919e182f7/coala/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-coala/00new/coala/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘coala’
    finding HTML links ... done
    as.segsites.GENOME                      html  
    as.segsites                             html  
    calc_jsfs                               html  
    calc_sumstats_from_data                 html  
    check_model                             html  
    coal_model                              html  
    coala-package                           html  
    conv_to_ms_arg                          html  
    create_abc_param                        html  
    create_abc_sumstat                      html  
    feat_growth                             html  
    feat_ignore_singletons                  html  
    feat_migration                          html  
    feat_mutation                           html  
    feat_outgroup                           html  
    feat_pop_merge                          html  
    feat_recombination                      html  
    feat_sample                             html  
    feat_selection                          html  
    feat_size_change                        html  
    feat_unphased                           html  
    get_features                            html  
    list_simulators                         html  
    locus                                   html  
    locus_trio                              html  
    par_variation                           html  
    par_zero_inflation                      html  
    parameter                               html  
    plus-.coalmodelpart                     html  
    scale_model                             html  
    search_executable                       html  
    segsites                                html  
    simulate.coalmodel                      html  
    simulator_ms                            html  
    simulator_msms                          html  
    simulator_scrm                          html  
    simulator_seqgen                        html  
    sumstat_class                           html  
    sumstat_dna                             html  
    sumstat_file                            html  
    sumstat_four_gamete                     html  
    sumstat_ihh                             html  
    sumstat_jsfs                            html  
    sumstat_mcmf                            html  
    sumstat_nucleotide_div                  html  
    sumstat_omega                           html  
    sumstat_seg_sites                       html  
    sumstat_sfs                             html  
    sumstat_tajimas_d                       html  
    sumstat_trees                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (coala)