* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘coFAST’ ...
** this is package ‘coFAST’ version ‘0.1.0’
** package ‘coFAST’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.3.0-10) 14.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpgSxmxe/R.INSTALLe648a6434a32b/coFAST/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  "-DARMA_64BIT_WORD=1" -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  "-DARMA_64BIT_WORD=1" -fpic  -g -O2 -Wall -pedantic -mtune=native   -c cofast_util.cpp -o cofast_util.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o coFAST.so RcppExports.o cofast_util.o -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpgSxmxe/R.INSTALLe648a6434a32b/coFAST/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpgSxmxe/R.INSTALLe648a6434a32b/coFAST/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpgSxmxe/R.INSTALLe648a6434a32b/coFAST/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-coFAST/00new/coFAST/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘coFAST’
    finding HTML links ... done
    AddAdj                                  html  
    AddCluster                              html  
    Addcoord2embed                          html  
    AggregationScore                        html  
    CosMx_subset                            html  
    NCFM                                    html  
    coFAST                                  html  
    coembed_plot                            html  
    coembedding_umap                        html  
    diagnostic.cor.eigs                     html  
    find.signature.genes                    html  
    get.top.signature.dat                   html  
    pbmc3k_subset                           html  
    pdistance                               html  
    top5_signatures                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (coFAST)