* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘cmbClust’ ...
** package ‘cmbClust’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’
make[1]: Entering directory '/tmp/RtmpW4G5KE/R.INSTALL1ffb971269c4b0/cmbClust/src'
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -D__HAVE_R_ -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c AllPerms.c -o AllPerms.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -D__HAVE_R_ -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c EM.c -o EM.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -D__HAVE_R_ -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c EM_Estep.c -o EM_Estep.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -D__HAVE_R_ -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c EM_Mstep.c -o EM_Mstep.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -D__HAVE_R_ -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c EM_llk.c -o EM_llk.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -D__HAVE_R_ -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c Order.c -o Order.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -D__HAVE_R_ -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c Order_EM.c -o Order_EM.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -D__HAVE_R_ -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c Order_EMEM.c -o Order_EMEM.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -D__HAVE_R_ -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c Order_EM_Estep.c -o Order_EM_Estep.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -D__HAVE_R_ -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c Order_EM_Mstep1.c -o Order_EM_Mstep1.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -D__HAVE_R_ -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c Order_EM_Mstep2.c -o Order_EM_Mstep2.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -D__HAVE_R_ -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c Order_EM_llk.c -o Order_EM_llk.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -D__HAVE_R_ -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c libArray.c -o libArray.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -D__HAVE_R_ -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c libCEigen.c -o libCEigen.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -D__HAVE_R_ -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c libEVD.c -o libEVD.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -D__HAVE_R_ -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c libMatrix.c -o libMatrix.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -D__HAVE_R_ -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c mbc.c -o mbc.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -D__HAVE_R_ -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c registerDynamicSymbol.c -o registerDynamicSymbol.o
gcc-13 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o cmbClust.so AllPerms.o EM.o EM_Estep.o EM_Mstep.o EM_llk.o Order.o Order_EM.o Order_EMEM.o Order_EM_Estep.o Order_EM_Mstep1.o Order_EM_Mstep2.o Order_EM_llk.o libArray.o libCEigen.o libEVD.o libMatrix.o mbc.o registerDynamicSymbol.o -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpW4G5KE/R.INSTALL1ffb971269c4b0/cmbClust/src'
make[1]: Entering directory '/tmp/RtmpW4G5KE/R.INSTALL1ffb971269c4b0/cmbClust/src'
make[1]: Leaving directory '/tmp/RtmpW4G5KE/R.INSTALL1ffb971269c4b0/cmbClust/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-cmbClust/00new/cmbClust/libs
** R
** data
** demo
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘cmbClust’
    finding HTML links ... done
    ais                                     html  
    cmb.em                                  html  
    cmb.plot                                html  
    cmb.search                              html  
    cmbClust-package                        html  
    smltn                                   html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cmbClust)