* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘clustTMB’ ...
** this is package ‘clustTMB’ version ‘0.1.0’
** package ‘clustTMB’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.3.0-10) 14.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpWtlZlI/R.INSTALL136c98477e4b25/clustTMB/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/TMB/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DTMBAD_FRAMEWORK -DTMB_EIGEN_DISABLE_WARNINGS -fpic -g -O2 -Wall -pedantic -mtune=native -c clustTMB.cpp -o clustTMB.o
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/TMB/include/TMB.hpp:137,
from clustTMB.cpp:2:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/TMB/include/TMBad/TMBad.cpp: In function ‘TMBad::ad_adapt TMBad::F(const ad_adapt&, const ad_adapt&)’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/TMB/include/TMBad/TMBad.cpp:3060:10: warning: infinite recursion detected [-Winfinite-recursion]
3060 | ad_adapt F(const ad_adapt &x1, const ad_adapt &x2) {
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/TMB/include/TMBad/TMBad.cpp:3061:20: note: recursive call
3061 | return ad_adapt(F(ad_aug(x1), ad_aug(x2)));
| ~^~~~~~~~~~~~~~~~~~~~~~~~
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o clustTMB.so clustTMB.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/bin/Rscript" -e "cat(as.character(packageVersion('TMB')), '\n', sep="", file='../inst/TMB-version')"
"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/bin/Rscript" -e "cat(as.character(packageVersion('Matrix')), '\n', sep="", file='../inst/Matrix-version')"
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpWtlZlI/R.INSTALL136c98477e4b25/clustTMB/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpWtlZlI/R.INSTALL136c98477e4b25/clustTMB/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpWtlZlI/R.INSTALL136c98477e4b25/clustTMB/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-clustTMB/00new/clustTMB/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘clustTMB’
finding HTML links ... done
clustTMB html
coef.clustTMB html
extractAIC.clustTMB html
fixStruct.names html
init.options html
logLik.clustTMB html
lognormal html
mkInitClass html
parm.lookup html
print.clustTMB html
run.options html
setup.projDat html
setup.spatialDat html
skewness html
spdeStruct html
splitForm html
summary.clustTMB html
tweedie html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (clustTMB)