* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘cladoRcpp’ ...
** package ‘cladoRcpp’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’
using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’
make[1]: Entering directory '/tmp/RtmpS0gILE/R.INSTALL28abcb140e849e/cladoRcpp/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c basics.cpp -o basics.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c calc_anclikes_sp.cpp -o calc_anclikes_sp.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c init.c -o init.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o cladoRcpp.so basics.o calc_anclikes_sp.o init.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpS0gILE/R.INSTALL28abcb140e849e/cladoRcpp/src'
make[1]: Entering directory '/tmp/RtmpS0gILE/R.INSTALL28abcb140e849e/cladoRcpp/src'
make[1]: Leaving directory '/tmp/RtmpS0gILE/R.INSTALL28abcb140e849e/cladoRcpp/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-cladoRcpp/00new/cladoRcpp/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘cladoRcpp’
    finding HTML links ... done
    00-cladoRcpp-package                    html  
    Rcpp_combn_zerostart                    html  
    areas_list_to_states_list_old           html  
    numstates_from_numareas                 html  
    rcpp_areas_list_to_states_list          html  
    rcpp_calc_anclikes_sp                   html  
    rcpp_calc_anclikes_sp_COOprobs          html  
    rcpp_calc_anclikes_sp_COOweights_faster
                                            html  
    rcpp_calc_anclikes_sp_prebyte           html  
    rcpp_calc_anclikes_sp_rowsums           html  
    rcpp_calc_anclikes_sp_using_COOprobs    html  
    rcpp_calc_rowsums_for_COOweights_columnar
                                            html  
    rcpp_calc_splitlikes_using_COOweights_columnar
                                            html  
    rcpp_convolve                           html  
    rcpp_mult2probvect                      html  
    rcpp_states_list_to_DEmat               html  
    strsplit3                               html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cladoRcpp)