* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘cbioportalR’ ...
** this is package ‘cbioportalR’ version ‘1.1.1’
** package ‘cbioportalR’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘cbioportalR’
    finding HTML links ... done
    available_clinical_attributes           html  
    available_gene_panels                   html  
    available_patients                      html  
    available_profiles                      html  
    available_sample_lists                  html  
    available_samples                       html  
    available_studies                       html  
    cbioportalR-package                     html  
    cbp_api                                 html  
    dot-get_clinical_by_list_item           html  
    dot-get_clinical_pat_by_list_item       html  
    dot-get_data_by_sample                  html  
    dot-get_data_by_study                   html  
    get_alias                               html  
    get_cbioportal_token                    html  
    get_clinical_by_patient                 html  
    get_clinical_by_sample                  html  
    get_clinical_by_study                   html  
    get_cna_by_sample                       html  
    get_cna_by_study                        html  
    get_entrez_id                           html  
    get_fusions_by_sample                   html  
    get_fusions_by_study                    html  
    get_gene_panel                          html  
    get_genes                               html  
    get_genetics_by_sample                  html  
    get_genetics_by_study                   html  
    get_hugo_symbol                         html  
    get_mutations_by_sample                 html  
    get_mutations_by_study                  html  
    get_panel_by_sample                     html  
    get_samples_by_patient                  html  
    get_segments_by_sample                  html  
    get_segments_by_study                   html  
    get_study_info                          html  
    impact_gene_info                        html  
    lookup_id                               html  
    null-default                            html  
    pipe                                    html  
    set_cbioportal_db                       html  
    test_cbioportal_db                      html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cbioportalR)