* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘cauphy’ ...
** this is package ‘cauphy’ version ‘1.0.3’
** package ‘cauphy’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.3.0-10) 14.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmptWWBr3/R.INSTALL3a795a1f6a8813/cauphy/src'
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c Utils.c -o Utils.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c Tree.c -o Tree.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c SimulateTrait.c -o SimulateTrait.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c Kahan.c -o Kahan.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c ComplexLog.c -o ComplexLog.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c Cauchy.c -o Cauchy.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c Cauchy_R.c -o Cauchy_R.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c init.c -o init.o
gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o cauphy.so Utils.o Tree.o SimulateTrait.o Kahan.o ComplexLog.o Cauchy.o Cauchy_R.o init.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmptWWBr3/R.INSTALL3a795a1f6a8813/cauphy/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmptWWBr3/R.INSTALL3a795a1f6a8813/cauphy/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmptWWBr3/R.INSTALL3a795a1f6a8813/cauphy/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-cauphy/00new/cauphy/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘cauphy’
    finding HTML links ... done
    ancestral                               html  
    cauphylm                                html  
    checkDuplicates                         html  
    checkTraitTree                          html  
    check_tree                              html  
    compute_vcov                            html  
    do_optim                                html  
    find_modes                              html  
    fitCauchy                               html  
    fitCauchy.internal                      html  
    fit_function                            html  
    getBounds                               html  
    getBoundsCauchy                         html  
    getBoundsLambda                         html  
    getParamNames                           html  
    getStartingValues                       html  
    getStartingValuesCauchy                 html  
    getStartingValuesLambda                 html  
    hdi.ancestralCauchy                     html  
    increment                               html  
    initDispersionParameter                 html  
    initLambdaParameter                     html  
    initPositionParameter                   html  
    lizards                                 html  
    logDensityTipsCauchy                    html  
    maxLambda                               html  
    minusLikelihoodFixedRoot                html  
    minusLikelihoodFixedRoot_lm             html  
    minusLikelihoodFixedRoot_mu             html  
    minusLikelihoodREML                     html  
    minusLikelihoodRandomRoot               html  
    plot.ancestralCauchy                    html  
    plot.invisible                          html  
    plot.profile.cauphyfit                  html  
    plot_asr                                html  
    posteriorDensityAncestral               html  
    posteriorDensityIncrement               html  
    printRTreeTest                          html  
    profile.cauphyfit                       html  
    rTraitCauchy                            html  
    reroottip                               html  
    safe_get                                html  
    simulateTipsCauchy                      html  
    transformBranchLengths                  html  
    vcov.cauphyfit                          html  
    vcov.cauphylm                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cauphy)