* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘caugi’ ...
** this is package ‘caugi’ version ‘1.3.0’
** package ‘caugi’ successfully unpacked and MD5 sums checked
** using staged installation
Using cargo 1.95.0 (f2d3ce0bd 2026-03-21) (built from a source tarball)
Using rustc 1.95.0 (59807616e 2026-04-14) (built from a source tarball)
Building for CRAN.
Writing `src/Makevars`.
`tools/config.R` has finished.
** libs
using C compiler: ‘gcc-16 (Debian 16.2.0-1) 16.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpwRVwOE/R.INSTALL1d0c163aaee732/caugi/src'
gcc-16 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c entrypoint.c -o entrypoint.o
if [ -f ./rust/vendor.tar.xz ]; then \
tar xf rust/vendor.tar.xz && \
mkdir -p /home/hornik/tmp/scratch/RtmpwRVwOE/R.INSTALL1d0c163aaee732/caugi/src/.cargo && \
cp rust/vendor-config.toml /home/hornik/tmp/scratch/RtmpwRVwOE/R.INSTALL1d0c163aaee732/caugi/src/.cargo/config.toml; \
fi
export CARGO_HOME=/home/hornik/tmp/scratch/RtmpwRVwOE/R.INSTALL1d0c163aaee732/caugi/src/.cargo && \
export PATH="/home/hornik/bin:/usr/local/bin:/usr/bin:/bin:/home/hornik/.cargo/bin" && \
RUSTFLAGS=" --print=native-static-libs" cargo build -j 2 --offline --lib --release --manifest-path=./rust/Cargo.toml --target-dir ./rust/target
Compiling proc-macro2 v1.0.107
Compiling unicode-ident v1.0.24
Compiling quote v1.0.47
Compiling serde_core v1.0.229
Compiling extendr-ffi v0.9.0
Compiling syn v3.0.4
Compiling foldhash v0.1.5
Compiling hashbrown v0.17.1
Compiling zmij v1.0.23
Compiling paste v1.0.15
Compiling serde v1.0.229
Compiling equivalent v1.0.2
Compiling hashbrown v0.15.5
Compiling indexmap v2.14.1
Compiling serde_derive v1.0.229
Compiling syn v2.0.119
Compiling memchr v2.8.3
Compiling extendr-api v0.9.0
Compiling lazy_static v1.5.0
Compiling serde_json v1.0.151
Compiling fixedbitset v0.5.7
Compiling petgraph v0.8.3
Compiling extendr-macros v0.9.0
Compiling readonly v0.2.14
Compiling once_cell v1.21.4
Compiling itoa v1.0.18
Compiling log v0.4.34
Compiling rust-sugiyama v0.4.0
Compiling quick-xml v0.41.0
Compiling rustc-hash v2.1.3
Compiling bitflags v2.13.1
Compiling caugi v1.3.0 (/home/hornik/tmp/scratch/RtmpwRVwOE/R.INSTALL1d0c163aaee732/caugi/src/rust)
note: link against the following native artifacts when linking against this static library. The order and any duplication can be significant on some platforms
note: native-static-libs: -lR -lgcc_s -lutil -lrt -lpthread -lm -ldl -lc
Finished `release` profile [optimized] target(s) in 2m 06s
# Always clean up CARGOTMP
rm -Rf /home/hornik/tmp/scratch/RtmpwRVwOE/R.INSTALL1d0c163aaee732/caugi/src/.cargo;
gcc-16 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o caugi.so entrypoint.o -L./rust/target/release -lcaugi -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
rm -Rf /home/hornik/tmp/scratch/RtmpwRVwOE/R.INSTALL1d0c163aaee732/caugi/src/.cargo /home/hornik/tmp/scratch/RtmpwRVwOE/R.INSTALL1d0c163aaee732/caugi/src/vendor ./rust/target
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpwRVwOE/R.INSTALL1d0c163aaee732/caugi/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpwRVwOE/R.INSTALL1d0c163aaee732/caugi/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpwRVwOE/R.INSTALL1d0c163aaee732/caugi/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-caugi/00new/caugi/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘caugi’
finding HTML links ... done
add-caugi_plot-caugi_plot html
adjustment_set html
aid html
all.equal.caugi-caugi html
all_adjustment_sets_admg html
all_backdoor_sets html
ancestors html
anteriors html
as_adjacency html
as_bnlearn html
as_caugi html
as_dagitty html
as_igraph html
build html
caugi-equality html
caugi-package html
caugi html
caugi_default_options html
caugi_deserialize html
caugi_dot html
caugi_export html
caugi_graphml html
caugi_layout html
caugi_layout_bipartite html
caugi_layout_circle html
caugi_layout_fruchterman_reingold html
caugi_layout_kamada_kawai html
caugi_layout_sugiyama html
caugi_layout_tiered html
caugi_mermaid html
caugi_options html
caugi_plot html
caugi_serialize html
caugi_verbs html
children html
compare_proxy.caugi-caugi html
condition_marginalize html
count_dags html
d_separated html
dag_from_pdag html
descendants html
districts html
divide-caugi_plot-caugi_plot html
dot-build_edges_from_session html
dot-caugi_fit_on_line html
dot-collect_edges_nodes html
dot-combine_plus html
dot-contains_edge html
dot-edge_constructor html
dot-edge_constructor_idx html
dot-edge_ops_get html
dot-edge_spec html
dot-edge_type_from_anteriors html
dot-edge_units_to_dt html
dot-expand_nodes html
dot-expand_targets html
dot-flatten_edge_chain html
dot-get_edges html
dot-get_nodes html
dot-glyph_map_get html
dot-glyph_of html
dot-is_edge_call html
dot-is_node_expr html
dot-node_constructor html
dot-nodes_to_indices html
dot-not_m_separated_for_all_subsets html
dot-parse_edge_arg html
dot-register_edge html
dot-resolve_idx0_get html
dot-segment_units html
dot-session_to_caugi html
dot-set_names html
dot-split_plus html
dot-sync_session_inplace html
dot-update_caugi html
dot-validate_nodes_and_index html
edge_operators html
edge_types html
edges html
enumerate_dags html
exogenize html
exogenous html
export-classes html
format-caugi html
format-dot html
format-graphml html
format-mermaid html
generate_graph html
hd html
is_acyclic html
is_admg html
is_ag html
is_caugi html
is_cpdag html
is_dag html
is_edge_symmetric html
is_empty_caugi html
is_mag html
is_mpdag html
is_pdag html
is_simple html
is_ug html
is_valid_adjustment_admg html
is_valid_backdoor html
knit_print.caugi_export html
latent_project html
length.caugi html
m_separated html
makeContent.caugi_edge_grob html
markov_blanket html
meek_closure html
minimal_separator html
moralize html
mutate_caugi html
neighbors html
nodes html
normalize_latent_structure html
parents html
plot.caugi html
posteriors html
print.caugi html
read_caugi html
read_graphml html
register_caugi_edge html
registry html
same_nodes html
shd html
simulate_data html
skeleton html
spouses html
subgraph html
to_dot html
to_graphml html
to_mermaid html
topological_sort html
write_caugi html
write_dot html
write_graphml html
write_mermaid html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (caugi)