* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘caugi’ ...
** this is package ‘caugi’ version ‘1.0.0’
** package ‘caugi’ successfully unpacked and MD5 sums checked
** using staged installation
Using cargo 1.91.1 (ea2d97820 2025-10-10) (built from a source tarball)
Using rustc 1.91.1 (ed61e7d7e 2025-11-07) (built from a source tarball)
Building for CRAN.
Writing `src/Makevars`.
`tools/config.R` has finished.
** libs
using C compiler: ‘gcc-14 (Debian 14.3.0-10) 14.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpkS4M50/R.INSTALL3e8bc760f30b92/caugi/src'
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c entrypoint.c -o entrypoint.o
if [ -f ./rust/vendor.tar.xz ]; then \
tar xf rust/vendor.tar.xz && \
mkdir -p /home/hornik/tmp/scratch/RtmpkS4M50/R.INSTALL3e8bc760f30b92/caugi/src/.cargo && \
cp rust/vendor-config.toml /home/hornik/tmp/scratch/RtmpkS4M50/R.INSTALL3e8bc760f30b92/caugi/src/.cargo/config.toml; \
fi
export CARGO_HOME=/home/hornik/tmp/scratch/RtmpkS4M50/R.INSTALL3e8bc760f30b92/caugi/src/.cargo && \
export PATH="/home/hornik/bin:/usr/local/bin:/usr/bin:/bin:/home/hornik/.cargo/bin" && \
RUSTFLAGS=" --print=native-static-libs" cargo build -j 2 --offline --lib --release --manifest-path=./rust/Cargo.toml --target-dir ./rust/target
Compiling zerocopy v0.8.31
Compiling proc-macro2 v1.0.103
Compiling cfg-if v1.0.4
Compiling quote v1.0.42
Compiling libc v0.2.178
Compiling unicode-ident v1.0.22
Compiling crossbeam-utils v0.8.21
Compiling version_check v0.9.5
Compiling ahash v0.8.12
Compiling syn v2.0.111
Compiling serde_core v1.0.228
Compiling hashbrown v0.16.1
Compiling equivalent v1.0.2
Compiling once_cell v1.21.3
Compiling indexmap v2.12.1
Compiling crossbeam-epoch v0.9.18
Compiling getrandom v0.2.16
Compiling extendr-ffi v0.8.1
Compiling rayon-core v1.13.0
Compiling rand_core v0.6.4
Compiling crossbeam-deque v0.8.6
Compiling ppv-lite86 v0.2.21
Compiling paste v1.0.15
Compiling allocator-api2 v0.2.21
Compiling serde v1.0.228
Compiling foldhash v0.1.5
Compiling zmij v1.0.2
Compiling hashbrown v0.15.5
Compiling hashbrown v0.14.5
Compiling rand_chacha v0.3.1
Compiling serde_derive v1.0.228
Compiling either v1.15.0
Compiling fixedbitset v0.5.7
Compiling memchr v2.7.6
Compiling fixedbitset v0.4.2
Compiling serde_json v1.0.149
Compiling extendr-api v0.8.1
Compiling petgraph v0.6.5
Compiling petgraph v0.8.3
Compiling rayon v1.11.0
Compiling hashlink v0.8.4
Compiling rand v0.8.5
Compiling extendr-macros v0.8.1
Compiling num_cpus v1.17.0
Compiling log v0.4.29
Compiling itoa v1.0.15
Compiling rustc-hash v1.1.0
Compiling quad-rand v0.2.3
Compiling glam v0.21.3
Compiling fdg-sim v0.9.1
Compiling gadjid v0.1.0 (https://github.com/CausalDisco/gadjid?rev=5b97028d4e943ce8a642d2b7bc1145f5435f619a#5b97028d)
Compiling rust-sugiyama v0.4.0
Compiling quick-xml v0.39.0
Compiling rustc-hash v2.1.1
Compiling bitflags v2.10.0
Compiling caugi v0.4.0 (/home/hornik/tmp/scratch/RtmpkS4M50/R.INSTALL3e8bc760f30b92/caugi/src/rust)
note: link against the following native artifacts when linking against this static library. The order and any duplication can be significant on some platforms.
note: native-static-libs: -lR -lgcc_s -lutil -lrt -lpthread -lm -ldl -lc
Finished `release` profile [optimized] target(s) in 2m 13s
# Always clean up CARGOTMP
rm -Rf /home/hornik/tmp/scratch/RtmpkS4M50/R.INSTALL3e8bc760f30b92/caugi/src/.cargo;
gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o caugi.so entrypoint.o -L./rust/target/release -lcaugi -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
rm -Rf /home/hornik/tmp/scratch/RtmpkS4M50/R.INSTALL3e8bc760f30b92/caugi/src/.cargo /home/hornik/tmp/scratch/RtmpkS4M50/R.INSTALL3e8bc760f30b92/caugi/src/vendor ./rust/target
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpkS4M50/R.INSTALL3e8bc760f30b92/caugi/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpkS4M50/R.INSTALL3e8bc760f30b92/caugi/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpkS4M50/R.INSTALL3e8bc760f30b92/caugi/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-caugi/00new/caugi/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘caugi’
finding HTML links ... done
add-caugi_plot-caugi_plot html
adjustment_set html
aid html
all_adjustment_sets_admg html
all_backdoor_sets html
ancestors html
anteriors html
as_adjacency html
as_bnlearn html
as_caugi html
as_dagitty html
as_igraph html
build html
caugi-package html
caugi html
caugi_default_options html
caugi_deserialize html
caugi_dot html
caugi_export html
caugi_graphml html
caugi_layout html
caugi_layout_bipartite html
caugi_layout_fruchterman_reingold html
caugi_layout_kamada_kawai html
caugi_layout_sugiyama html
caugi_layout_tiered html
caugi_mermaid html
caugi_options html
caugi_plot html
caugi_serialize html
caugi_verbs html
children html
condition_marginalize html
d_separated html
descendants html
districts html
divide-caugi_plot-caugi_plot html
dot-caugi_fit_on_line html
dot-cg_state html
dot-collect_edges_nodes html
dot-combine_plus html
dot-contains_edge html
dot-edge_constructor html
dot-edge_constructor_idx html
dot-edge_ops_get html
dot-edge_spec html
dot-edge_type_from_anteriors html
dot-edge_units_to_dt html
dot-expand_nodes html
dot-expand_targets html
dot-flatten_edge_chain html
dot-get_edges html
dot-get_nodes html
dot-getter_output html
dot-glyph_map_get html
dot-glyph_of html
dot-is_edge_call html
dot-is_node_expr html
dot-mark_not_built html
dot-node_constructor html
dot-not_m_separated_for_all_subsets html
dot-parse_edge_arg html
dot-register_edge html
dot-resolve_idx0_get html
dot-segment_units html
dot-set_names html
dot-split_plus html
dot-update_caugi html
dot-view_to_caugi html
edge_operators html
edge_types html
edges html
exogenize html
exogenous html
export-classes html
format-caugi html
format-dot html
format-graphml html
format-mermaid html
generate_graph html
hd html
is_acyclic html
is_admg html
is_ag html
is_caugi html
is_cpdag html
is_dag html
is_edge_symmetric html
is_empty_caugi html
is_mag html
is_pdag html
is_ug html
is_valid_adjustment_admg html
is_valid_backdoor html
knit_print.caugi_export html
latent_project html
length html
m_separated html
makeContent.caugi_edge_grob html
markov_blanket html
moralize html
mutate_caugi html
neighbors html
nodes html
parents html
plot html
print html
read_caugi html
read_graphml html
register_caugi_edge html
registry html
same_nodes html
shd html
simulate_data html
skeleton html
spouses html
subgraph html
to_dot html
to_graphml html
to_mermaid html
topological_sort html
write_caugi html
write_dot html
write_graphml html
write_mermaid html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (caugi)