* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘catmodeling’ ...
** this is package ‘catmodeling’ version ‘0.0.1’
** package ‘catmodeling’ successfully unpacked and MD5 sums checked
** using staged installation
Using cargo 1.95.0 (f2d3ce0bd 2026-03-21) (built from a source tarball)
Using rustc 1.95.0 (59807616e 2026-04-14) (built from a source tarball)
Building for CRAN.
Writing `src/Makevars`.
`tools/config.R` has finished.
** libs
using C compiler: ‘gcc-15 (Debian 15.3.0-1) 15.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpO6ftwT/R.INSTALL12ecd1748aeaf/catmodeling/src'
gcc-15 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c entrypoint.c -o entrypoint.o
if [ -d ./vendor ]; then \
echo "=== Using offline vendor directory ==="; \
mkdir -p /home/hornik/tmp/scratch/RtmpO6ftwT/R.INSTALL12ecd1748aeaf/catmodeling/src/.cargo && \
cp rust/vendor-config.toml /home/hornik/tmp/scratch/RtmpO6ftwT/R.INSTALL12ecd1748aeaf/catmodeling/src/.cargo/config.toml; \
elif [ -f ./rust/vendor.tar.xz ]; then \
echo "=== Using offline vendor tarball ==="; \
tar xf rust/vendor.tar.xz && \
mkdir -p /home/hornik/tmp/scratch/RtmpO6ftwT/R.INSTALL12ecd1748aeaf/catmodeling/src/.cargo && \
cp rust/vendor-config.toml /home/hornik/tmp/scratch/RtmpO6ftwT/R.INSTALL12ecd1748aeaf/catmodeling/src/.cargo/config.toml; \
fi
=== Using offline vendor tarball ===
export CARGO_HOME=/home/hornik/tmp/scratch/RtmpO6ftwT/R.INSTALL12ecd1748aeaf/catmodeling/src/.cargo && \
export PATH="/home/hornik/bin:/usr/local/bin:/usr/bin:/bin:/home/hornik/.cargo/bin" && \
RUSTFLAGS=" --print=native-static-libs" cargo build -j 2 --offline --lib --release --manifest-path=./rust/Cargo.toml --target-dir ./rust/target
Compiling proc-macro2 v1.0.106
Compiling unicode-ident v1.0.24
Compiling quote v1.0.46
Compiling extendr-ffi v0.9.0
Compiling paste v1.0.15
Compiling lazy_static v1.5.0
Compiling syn v2.0.118
Compiling extendr-api v0.9.0
Compiling once_cell v1.21.4
Compiling extendr-macros v0.9.0
Compiling readonly v0.2.13
Compiling catmodeling v0.1.0 (/home/hornik/tmp/scratch/RtmpO6ftwT/R.INSTALL12ecd1748aeaf/catmodeling/src/rust)
note: link against the following native artifacts when linking against this static library. The order and any duplication can be significant on some platforms
note: native-static-libs: -lR -lgcc_s -lutil -lrt -lpthread -lm -ldl -lc
Finished `release` profile [optimized] target(s) in 24.44s
export CARGO_HOME=/home/hornik/tmp/scratch/RtmpO6ftwT/R.INSTALL12ecd1748aeaf/catmodeling/src/.cargo && \
export PATH="/home/hornik/bin:/usr/local/bin:/usr/bin:/bin:/home/hornik/.cargo/bin" && \
cargo run -j 2 --offline --bin document --manifest-path=./rust/Cargo.toml --target-dir ./rust/target
Compiling proc-macro2 v1.0.106
Compiling unicode-ident v1.0.24
Compiling quote v1.0.46
Compiling extendr-ffi v0.9.0
Compiling paste v1.0.15
Compiling syn v2.0.118
Compiling lazy_static v1.5.0
Compiling extendr-api v0.9.0
Compiling once_cell v1.21.4
Compiling extendr-macros v0.9.0
Compiling readonly v0.2.13
Compiling catmodeling v0.1.0 (/home/hornik/tmp/scratch/RtmpO6ftwT/R.INSTALL12ecd1748aeaf/catmodeling/src/rust)
Finished `dev` profile [unoptimized + debuginfo] target(s) in 19.24s
Running `rust/target/debug/document`
# Always clean up CARGOTMP
rm -Rf /home/hornik/tmp/scratch/RtmpO6ftwT/R.INSTALL12ecd1748aeaf/catmodeling/src/.cargo;
gcc-15 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o catmodeling.so entrypoint.o -L./rust/target/release -lcatmodeling -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
rm -Rf /home/hornik/tmp/scratch/RtmpO6ftwT/R.INSTALL12ecd1748aeaf/catmodeling/src/.cargo /home/hornik/tmp/scratch/RtmpO6ftwT/R.INSTALL12ecd1748aeaf/catmodeling/src/vendor ./rust/target
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpO6ftwT/R.INSTALL12ecd1748aeaf/catmodeling/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpO6ftwT/R.INSTALL12ecd1748aeaf/catmodeling/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpO6ftwT/R.INSTALL12ecd1748aeaf/catmodeling/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-catmodeling/00new/catmodeling/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘catmodeling’
finding HTML links ... done
addvectors html
bootstrap_ep_uncertainty html
calc_beta_params html
catxl html
compare_distance_routines html
defineregion html
elt_add_nahu_cat html
elt_collapse_regions html
elt_diagnostics_aaeaal html
elt_diagnostics_aaeaal_by_cat html
elt_diagnostics_aaeaal_with_adj html
elt_diagnostics_epcurves html
elt_diagnostics_epcurves_with_adj html
elt_rate_adjustments_cat_2_event html
elt_rate_adjustments_regcat_2_event html
filetest html
hours_clause html
hours_clause_apply_part2 html
hours_clause_wrapper_ylt html
hours_clause_write_settings html
imports html
input_checks html
make_2_ep_by_sorting html
make_elt html
make_ep_by_sorting html
make_ylt html
nahu_define_gmst_scenarios html
nahu_define_k2020_zenodo_landfall_adj html
nahu_k2020_rates_interpolation html
nahu_write_settings html
nahu_ylt_surgery html
rust_dist_haversine html
rust_hello_world html
rust_hours_clause_apply_part2 html
rust_square html
stopi html
template html
whatreg html
writeNresults2csv html
ws2catf html
ylt_add_cat_2_longylt html
ylt_add_region_2_longylt html
ylt_check_for_2_events_on_same_day html
ylt_check_for_same_events_in_one_year html
ylt_diagnostics_aaeaal html
ylt_diagnostics_aaeaal_by_cat_change_printf
html
ylt_diagnostics_aaeaal_by_cat_printf html
ylt_diagnostics_aaeaal_by_catf html
ylt_diagnostics_aaeaal_change_printf html
ylt_diagnostics_aaeaal_printf html
ylt_diagnostics_loss_thresholds html
ylt_diagnostics_nchanges html
ylt_long2short html
ylt_rate_adjustments_cat_2_row html
ylt_rate_adjustments_catreg_2_row html
ylt_write2results2csv html
yltsim html
yltsim_inc html
yltsurgery html
yltsurgery_groups html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (catmodeling)