* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘catlearn’ ...
** package ‘catlearn’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-25) 13.2.0’
make[1]: Entering directory '/tmp/RtmpZiOVQc/R.INSTALL34896f5032147/catlearn/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c slpBM.cpp -o slpBM.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c slpDGCM.cpp -o slpDGCM.o
slpDGCM.cpp: In function ‘arma::vec mute(arma::mat, arma::rowvec)’:
slpDGCM.cpp:25:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
   25 |   for (int j = 0; j < index.n_elem; ++j) {
      |                   ~~^~~~~~~~~~~~~~
slpDGCM.cpp: In function ‘arma::mat exponential_similarity(double, int, arma::colvec)’:
slpDGCM.cpp:40:23: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
   40 |   for (uword i = 0; i < outcomes; i++) {
      |                     ~~^~~~~~~~~~
slpDGCM.cpp: In function ‘arma::mat evidence(arma::colvec, double, int, arma::vec, arma::colvec, arma::colvec)’:
slpDGCM.cpp:56:23: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
   56 |   for (uword i = 0; i < outcomes; i++) {
      |                     ~~^~~~~~~~~~
slpDGCM.cpp: In function ‘Rcpp::List slpDGCM(Rcpp::List, arma::mat, std::string, bool, bool)’:
slpDGCM.cpp:136:9: warning: unused variable ‘n’ [-Wunused-variable]
  136 |   uword n = exemplars.n_cols;
      |         ^
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c slpEXIT.cpp -o slpEXIT.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c slpLMSnet.cpp -o slpLMSnet.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c slpMack75.cpp -o slpMack75.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c slpNNCAG.cpp -o slpNNCAG.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c slpNNRAS.cpp -o slpNNRAS.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c slpRW.cpp -o slpRW.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c slpalcove.cpp -o slpalcove.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c slpcovis.cpp -o slpcovis.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o catlearn.so RcppExports.o slpBM.o slpDGCM.o slpEXIT.o slpLMSnet.o slpMack75.o slpNNCAG.o slpNNRAS.o slpRW.o slpalcove.o slpcovis.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpZiOVQc/R.INSTALL34896f5032147/catlearn/src'
make[1]: Entering directory '/tmp/RtmpZiOVQc/R.INSTALL34896f5032147/catlearn/src'
make[1]: Leaving directory '/tmp/RtmpZiOVQc/R.INSTALL34896f5032147/catlearn/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-catlearn/00new/catlearn/libs
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘catlearn’
    finding HTML links ... done
    act2probrat                             html  
    catlearn-package                        html  
    convertSUSTAIN                          html  
    homa76                                  html  
    krus96                                  html  
    krus96exit                              html  
    krus96train                             html  
    medin87train                            html  
    nosof88                                 html  
    nosof88exalcove                         html  
    nosof88exalcove_opt                     html  
    nosof88oat                              html  
    nosof88protoalcove                      html  
    nosof88protoalcove_opt                  html  
    nosof88train                            html  
    nosof94                                 html  
    nosof94bnalcove                         html  
    nosof94exalcove                         html  
    nosof94exalcove_opt                     html  
    nosof94oat                              html  
    nosof94plot                             html  
    nosof94sustain                          html  
    nosof94train                            html  
    shin92                                  html  
    shin92exalcove                          html  
    shin92exalcove_opt                      html  
    shin92oat                               html  
    shin92protoalcove                       html  
    shin92protoalcove_opt                   html  
    shin92train                             html  
    slpALCOVE                               html  
    slpBM                                   html  
    slpCOVIS                                html  
    slpDGCM                                 html  
    slpDIVA                                 html  
    slpEXIT                                 html  
    slpLMSnet                               html  
    slpMBMF                                 html  
    slpMack75                               html  
    slpNNCAG                                html  
    slpNNRAS                                html  
    slpRW                                   html  
    slpSUSTAIN                              html  
    ssecl                                   html  
    stsimGCM                                html  
    thegrid                                 html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* creating tarball
packaged installation of ‘catlearn’ as ‘catlearn_1.0_R_x86_64-pc-linux-gnu.tar.gz’
* DONE (catlearn)