* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘catlearn’ ...
** package ‘catlearn’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’
make[1]: Entering directory '/tmp/RtmpZwo5n7/R.INSTALL125aa38f2fe37/catlearn/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c slpBM.cpp -o slpBM.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c slpDGCM.cpp -o slpDGCM.o
slpDGCM.cpp: In function ‘arma::vec mute(arma::mat, arma::rowvec)’:
slpDGCM.cpp:25:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
25 | for (int j = 0; j < index.n_elem; ++j) {
| ~~^~~~~~~~~~~~~~
slpDGCM.cpp: In function ‘arma::mat exponential_similarity(double, int, arma::colvec)’:
slpDGCM.cpp:40:23: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
40 | for (uword i = 0; i < outcomes; i++) {
| ~~^~~~~~~~~~
slpDGCM.cpp: In function ‘arma::mat evidence(arma::colvec, double, int, arma::vec, arma::colvec, arma::colvec)’:
slpDGCM.cpp:56:23: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
56 | for (uword i = 0; i < outcomes; i++) {
| ~~^~~~~~~~~~
slpDGCM.cpp: In function ‘Rcpp::List slpDGCM(Rcpp::List, arma::mat, std::string, bool, bool)’:
slpDGCM.cpp:136:9: warning: unused variable ‘n’ [-Wunused-variable]
136 | uword n = exemplars.n_cols;
| ^
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c slpEXIT.cpp -o slpEXIT.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c slpLMSnet.cpp -o slpLMSnet.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c slpMack75.cpp -o slpMack75.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c slpNNCAG.cpp -o slpNNCAG.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c slpNNRAS.cpp -o slpNNRAS.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c slpRW.cpp -o slpRW.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c slpalcove.cpp -o slpalcove.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c slpcovis.cpp -o slpcovis.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o catlearn.so RcppExports.o slpBM.o slpDGCM.o slpEXIT.o slpLMSnet.o slpMack75.o slpNNCAG.o slpNNRAS.o slpRW.o slpalcove.o slpcovis.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpZwo5n7/R.INSTALL125aa38f2fe37/catlearn/src'
make[1]: Entering directory '/tmp/RtmpZwo5n7/R.INSTALL125aa38f2fe37/catlearn/src'
make[1]: Leaving directory '/tmp/RtmpZwo5n7/R.INSTALL125aa38f2fe37/catlearn/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-catlearn/00new/catlearn/libs
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘catlearn’
finding HTML links ... done
act2probrat html
catlearn-package html
convertSUSTAIN html
homa76 html
krus96 html
krus96exit html
krus96train html
medin87train html
nosof88 html
nosof88exalcove html
nosof88exalcove_opt html
nosof88oat html
nosof88protoalcove html
nosof88protoalcove_opt html
nosof88train html
nosof94 html
nosof94bnalcove html
nosof94exalcove html
nosof94exalcove_opt html
nosof94oat html
nosof94plot html
nosof94sustain html
nosof94train html
shin92 html
shin92exalcove html
shin92exalcove_opt html
shin92oat html
shin92protoalcove html
shin92protoalcove_opt html
shin92train html
slpALCOVE html
slpBM html
slpCOVIS html
slpDGCM html
slpDIVA html
slpEXIT html
slpLMSnet html
slpMBMF html
slpMack75 html
slpNNCAG html
slpNNRAS html
slpRW html
slpSUSTAIN html
ssecl html
stsimGCM html
thegrid html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (catlearn)