* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘carbondate’ ...
** package ‘carbondate’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-24) 13.2.0’
make[1]: Entering directory '/tmp/Rtmp1NSULK/R.INSTALL1bb82646a76c3e/carbondate/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp11.cpp -o cpp11.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c find_hpd.cpp -o find_hpd.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c find_predictive_density.cpp -o find_predictive_density.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c polya_urn_update_helpers.cpp -o polya_urn_update_helpers.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c polya_urn_update_step.cpp -o polya_urn_update_step.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c sample.cpp -o sample.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c update_calendar_ages.cpp -o update_calendar_ages.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c update_calendar_ages_rjpp.cpp -o update_calendar_ages_rjpp.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c update_helpers.cpp -o update_helpers.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c walker_update_helpers.cpp -o walker_update_helpers.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c walker_update_step.cpp -o walker_update_step.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o carbondate.so cpp11.o find_hpd.o find_predictive_density.o polya_urn_update_helpers.o polya_urn_update_step.o sample.o update_calendar_ages.o update_calendar_ages_rjpp.o update_helpers.o walker_update_helpers.o walker_update_step.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmp1NSULK/R.INSTALL1bb82646a76c3e/carbondate/src'
make[1]: Entering directory '/tmp/Rtmp1NSULK/R.INSTALL1bb82646a76c3e/carbondate/src'
make[1]: Leaving directory '/tmp/Rtmp1NSULK/R.INSTALL1bb82646a76c3e/carbondate/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-carbondate/00new/carbondate/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘carbondate’
finding HTML links ... done
CalibrateSingleDetermination html
FindPosteriorMeanRate html
FindPredictiveCalendarAgeDensity html
FindSummedProbabilityDistribution html
GenerateOxcalCode html
InterpolateCalibrationCurve html
PPcalibrate html
PlotCalendarAgeDensityIndividualSample
html
PlotConvergenceData html
PlotGelmanRubinDiagnosticMultiChain html
PlotGelmanRubinDiagnosticSingleChain html
PlotNumberOfClusters html
PlotNumberOfInternalChanges html
PlotPosteriorChangePoints html
PlotPosteriorHeights html
PlotPosteriorMeanRate html
PlotPredictiveCalendarAgeDensity html
PolyaUrnBivarDirichlet html
WalkerBivarDirichlet html
alces html
armit html
bison html
buchanan html
cervus html
equus html
human html
intcal04 html
intcal09 html
intcal13 html
intcal20 html
intcal98 html
kerr html
mammuthus html
pp_uniform_phase html
shcal04 html
shcal13 html
shcal20 html
two_normals html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* creating tarball
packaged installation of ‘carbondate’ as ‘carbondate_1.0.1_R_x86_64-pc-linux-gnu.tar.gz’
* DONE (carbondate)