* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘blindrecalc’ ...
** package ‘blindrecalc’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’
make[1]: Entering directory '/tmp/RtmpqbDAxe/R.INSTALL3aba6f32533cba/blindrecalc/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c chisquare_helper.cpp -o chisquare_helper.o
chisquare_helper.cpp: In function ‘double chisq_recalc_reject(Rcpp::S4, double, double, Rcpp::String, Rcpp::NumericMatrix)’:
chisquare_helper.cpp:141:50: warning: ‘p1_e’ may be used uninitialized [-Wmaybe-uninitialized]
141 | pow(1 - p1_c, n_cdot - x_c) * pow(p1_e, x_e) *
| ~~~^~~~~~~~~~~
chisquare_helper.cpp:59:10: note: ‘p1_e’ was declared here
59 | double p1_e, p1_c, n2, p_c, p_e, p_hat, n_new, ts, x;
| ^~~~
chisquare_helper.cpp:140:62: warning: ‘p1_c’ may be used uninitialized [-Wmaybe-uninitialized]
140 | Rf_choose(n_c2, k) * Rf_choose(n_e2, l) * pow(p1_c, x_c) *
| ~~~^~~~~~~~~~~
chisquare_helper.cpp:59:16: note: ‘p1_c’ was declared here
59 | double p1_e, p1_c, n2, p_c, p_e, p_hat, n_new, ts, x;
| ^~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c farringtonmanning_helper.cpp -o farringtonmanning_helper.o
farringtonmanning_helper.cpp: In function ‘double fm_fix_reject(Rcpp::S4, double, double, Rcpp::String)’:
farringtonmanning_helper.cpp:78:39: warning: ‘p1_e’ may be used uninitialized [-Wmaybe-uninitialized]
78 | pow(1 - p1_c, n_c - i) * pow(p1_e, j) * pow(1 - p1_e, n_e - j);
| ~~~^~~~~~~~~
farringtonmanning_helper.cpp:40:10: note: ‘p1_e’ was declared here
40 | double p1_e, p1_c, p_c, p_e, pt_c, pt_e, se, ts, sum_prob;
| ^~~~
farringtonmanning_helper.cpp:77:64: warning: ‘p1_c’ may be used uninitialized [-Wmaybe-uninitialized]
77 | sum_prob = Rf_choose(n_c, i) * (Rf_choose(n_e, j) * pow(p1_c, i)) *
| ~~~^~~~~~~~~
farringtonmanning_helper.cpp:40:16: note: ‘p1_c’ was declared here
40 | double p1_e, p1_c, p_c, p_e, pt_c, pt_e, se, ts, sum_prob;
| ^~~~
farringtonmanning_helper.cpp: In function ‘double fm_recalc_reject(Rcpp::S4, double, double, Rcpp::String, Rcpp::NumericMatrix)’:
farringtonmanning_helper.cpp:168:20: warning: ‘p1_e’ may be used uninitialized [-Wmaybe-uninitialized]
168 | pow(p1_e, j + l) * pow(1 - p1_e, n_edot - j - l);
| ~~~^~~~~~~~~~~~~
farringtonmanning_helper.cpp:93:10: note: ‘p1_e’ was declared here
93 | double p1_e, p1_c, p_c, p_e, pt_c, pt_e, se, ts, sum_prob;
| ^~~~
farringtonmanning_helper.cpp:167:20: warning: ‘p1_c’ may be used uninitialized [-Wmaybe-uninitialized]
167 | pow(p1_c, i + k) * pow(1 - p1_c, n_cdot - i - k) *
| ~~~^~~~~~~~~~~~~
farringtonmanning_helper.cpp:93:16: note: ‘p1_c’ was declared here
93 | double p1_e, p1_c, p_c, p_e, pt_c, pt_e, se, ts, sum_prob;
| ^~~~
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o blindrecalc.so RcppExports.o chisquare_helper.o farringtonmanning_helper.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpqbDAxe/R.INSTALL3aba6f32533cba/blindrecalc/src'
make[1]: Entering directory '/tmp/RtmpqbDAxe/R.INSTALL3aba6f32533cba/blindrecalc/src'
make[1]: Leaving directory '/tmp/RtmpqbDAxe/R.INSTALL3aba6f32533cba/blindrecalc/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-blindrecalc/00new/blindrecalc/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘blindrecalc’
finding HTML links ... done
ChiSquare html
FarringtonManning html
Student html
adjusted_alpha.ChiSquare html
adjusted_alpha.FarringtonManning html
adjusted_alpha html
adjusted_alpha.Student html
blindrecalc html
n_dist.ChiSquare html
n_dist.FarringtonManning html
n_dist html
n_dist.Student html
n_fix.ChiSquare html
n_fix.FarringtonManning html
n_fix html
n_fix.Student html
pow.ChiSquare html
pow.FarringtonManning html
pow html
pow.Student html
simulation html
toer.ChiSquare html
toer.FarringtonManning html
toer html
toer.Student html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (blindrecalc)