* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘bipartite’ ...
** package ‘bipartite’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-23) 13.2.0’
using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’
make[1]: Entering directory '/tmp/RtmpmU3Hyz/R.INSTALLe3f534f1522e5/bipartite/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bmn5.cc -o bmn5.o
In file included from /usr/include/stdio.h:906,
from /usr/include/c++/13/cstdio:42,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/R.h:40,
from bmn5.cc:1:
In function ‘int fprintf(FILE*, const char*, ...)’,
inlined from ‘void calcIdiosyncTemp(double**, int**, int*, int*, int, int)’ at bmn5.cc:1580:29,
inlined from ‘void calcIdiosyncTemp(double**, int**, int*, int*, int, int)’ at bmn5.cc:1565:6:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:890:
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘void calcIdiosyncTemp(double**, int**, int*, int*, int, int)’:
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1220:10:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1226:12:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1228:11:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1230:10:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1274:21:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1275:21:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1278:42:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1280:43:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1283:41:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1285:22:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1286:23:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1289:43:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1291:44:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1294:42:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1296:22:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1317:20:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1318:20:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1321:42:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1323:43:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1326:41:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1328:22:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1329:23:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1332:43:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1334:44:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1337:42:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1339:23:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c identifyModules.cc -o identifyModules.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o bipartite.so bmn5.o identifyModules.o init.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpmU3Hyz/R.INSTALLe3f534f1522e5/bipartite/src'
make[1]: Entering directory '/tmp/RtmpmU3Hyz/R.INSTALLe3f534f1522e5/bipartite/src'
make[1]: Leaving directory '/tmp/RtmpmU3Hyz/R.INSTALLe3f534f1522e5/bipartite/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-bipartite/00new/bipartite/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘bipartite’
finding HTML links ... done
C.score html
H2fun html
ND html
NOS html
PAC html
PDI html
Safariland html
V.ratio html
array2linkmx html
as.one.mode html
as.tnet html
barrett1987 html
betalinkr html
finding level-2 HTML links ... done
betweenness_w html
bezerra2009 html
bipartite-package html
closeness_w html
clustering_tm html
compart html
computeModules html
czvalues html
decimalr2dtable html
degreedistr html
dfun html
discrepancy html
distance_w html
elberling1999 html
empty html
endpoint html
extinction html
fc html
frame2webs html
genweb html
grouplevel html
inouye1988 html
junker2013 html
kato1990 html
kevan1970 html
linklevel html
listModuleInformation html
memmott1999 html
mgen html
moduleWeb-class html
modulesLPA html
mosquin1967 html
motten1982 html
nest.smdm html
nested html
nestedcontribution html
nestedness html
nestedrank html
networklevel html
nodespec html
npartite html
null.distr html
null.t.test html
nullmodel html
olesen2002aigrettes html
olesen2002flores html
olito2015 html
ollerton2003 html
plotModuleWeb html
plotPAC html
plotmatrix html
plotweb html
plotweb2 html
printoutModuleInformation html
projecting_tm html
r2dexternal html
restrictednull html
robustness html
schemske1978 html
second.extinct html
shuffle.web html
slope.bipartite html
small1976 html
sortmatrix html
sortweb html
specieslevel html
strength html
swap.web html
symmetrise_w html
tnet_igraph html
togetherness html
vazarr html
vazcer html
vazllao html
vazmasc html
vazmasnc html
vaznull html
vazquec html
vazquenc html
vazquez.example html
versionlog html
visweb html
web2edges html
webs2array html
wine html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bipartite)