* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘bioregion’ ...
** this is package ‘bioregion’ version ‘1.2.0’
** package ‘bioregion’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.3.0-10) 14.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpGSimB2/R.INSTALL16babb1e6bfc4b/bioregion/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c abc.cpp -o abc.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o bioregion.so RcppExports.o abc.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpGSimB2/R.INSTALL16babb1e6bfc4b/bioregion/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpGSimB2/R.INSTALL16babb1e6bfc4b/bioregion/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpGSimB2/R.INSTALL16babb1e6bfc4b/bioregion/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-bioregion/00new/bioregion/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘bioregion’
    finding HTML links ... done
    betapart_to_bioregion                   html  
    bioregion_metrics                       html  
    bioregionalization_metrics              html  
    compare_bioregionalizations             html  
    cut_tree                                html  
    dissimilarity                           html  
    dissimilarity_to_similarity             html  
    find_optimal_n                          html  
    fishdf                                  html  
    fishmat                                 html  
    fishsf                                  html  
    hclu_diana                              html  
    hclu_hierarclust                        html  
    hclu_optics                             html  
    install_binaries                        html  
    map_bioregions                          html  
    mat_to_net                              html  
    net_to_mat                              html  
    netclu_beckett                          html  
    netclu_greedy                           html  
    netclu_infomap                          html  
    netclu_labelprop                        html  
    netclu_leadingeigen                     html  
    netclu_leiden                           html  
    netclu_louvain                          html  
    netclu_oslom                            html  
    netclu_walktrap                         html  
    nhclu_affprop                           html  
    nhclu_clara                             html  
    nhclu_clarans                           html  
    nhclu_dbscan                            html  
    nhclu_kmeans                            html  
    nhclu_pam                               html  
    similarity                              html  
    similarity_to_dissimilarity             html  
    site_species_metrics                    html  
    site_species_subset                     html  
    vegedf                                  html  
    vegemat                                 html  
    vegesf                                  html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bioregion)