* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘biomod2’ ...
** this is package ‘biomod2’ version ‘4.2-6-2’
** package ‘biomod2’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading


Checking Models arguments...
** help
*** installing help indices
  converting help for package ‘biomod2’
    finding HTML links ... done
    BIOMOD.ensemble.models.out              html  
    BIOMOD.formated.data.PA                 html  
    BIOMOD.formated.data                    html  
    BIOMOD.models.options                   html  
    BIOMOD.models.out                       html  
    BIOMOD.options.dataset                  html  
    BIOMOD.options.default                  html  
    BIOMOD.projection.out                   html  
    BIOMOD.stored.data                      html  
    BIOMOD_CrossValidation-deprecated       html  
    BIOMOD_EnsembleForecasting              html  
    BIOMOD_EnsembleModeling                 html  
    BIOMOD_FormatingData                    html  
    BIOMOD_LoadModels                       html  
    BIOMOD_Modeling                         html  
    BIOMOD_ModelingOptions-deprecated       html  
    BIOMOD_PresenceOnly-deprecated          html  
    BIOMOD_Projection                       html  
    BIOMOD_RangeSize                        html  
    BIOMOD_tuning-deprecated                html  
    BinaryTransformation-deprecated         html  
    DataSpecies                             html  
    Find.Optim.Stat-deprecated              html  
    ModelsTable                             html  
    OptionsBigboss                          html  
    ProbDensFunc-deprecated                 html  
    bioclim_current                         html  
    bioclim_future                          html  
    biomod2-deprecated                      html  
    biomod2_ensemble_model                  html  
    biomod2_model                           html  
    bm_BinaryTransformation                 html  
    bm_CrossValidation                      html  
    bm_FindOptimStat                        html  
    bm_MakeFormula                          html  
    bm_ModelingOptions                      html  
    bm_PlotEvalBoxplot                      html  
    bm_PlotEvalMean                         html  
    bm_PlotRangeSize                        html  
    bm_PlotResponseCurves                   html  
    bm_PlotVarImpBoxplot                    html  
    bm_PseudoAbsences                       html  
    bm_RunModelsLoop                        html  
    bm_SRE                                  html  
    bm_SampleBinaryVector                   html  
    bm_SampleFactorLevels                   html  
    bm_Tuning                               html  
    bm_VariablesImportance                  html  
    calculate.stat-deprecated               html  
    check_duplicated_cells                  html  
    dot-categorical2numeric                 html  
    dot-get_categorical_names               html  
    dot-get_env_class                       html  
    dot-load_gam_namespace                  html  
    dot-transform.outputs.list-deprecated   html  
    dot-transform_model.as.col              html  
    getStatOptimValue-deprecated            html  
    getters.bm                              html  
    getters.out                             html  
    load_stored_object                      html  
    makeFormula-deprecated                  html  
    models_scores_graph-deprecated          html  
    plot                                    html  
    predict.bm                              html  
    predict.em                              html  
    predict2.bm                             html  
    predict2.em                             html  
    rast.has.values                         html  
    response.plot2-deprecated               html  
    sample.factor.levels-deprecated         html  
    sre-deprecated                          html  
    summary                                 html  
    variables_importance-deprecated         html  
    zzz_bm                                  html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘mda’
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘gam’
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘earth’
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘maxnet’
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘randomForest’
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘xgboost’
** testing if installed package can be loaded from final location
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘mda’
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘gam’
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘earth’
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘maxnet’
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘randomForest’
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘xgboost’
** testing if installed package keeps a record of temporary installation path
* DONE (biomod2)