* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘biocohort’ ...
** this is package ‘biocohort’ version ‘0.1.1’
** package ‘biocohort’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘biocohort’
    finding HTML links ... done
    AnalysisSpec                            html  
    Cohort                                  html  
    Study                                   html  
    Subject                                 html  
    TranslationResult                       html  
    analysis_files                          html  
    analysis_list                           html  
    analysis_register                       html  
    analysis_spec                           html  
    analysis_spec_new                       html  
    apply_corrections                       html  
    as_coldata                              html  
    biocohort-package                       html  
    check_paths                             html  
    cohort-subject                          html  
    cohort_contrasts                        html  
    cohort_derive                           html  
    cohort_filter                           html  
    cohort_groups                           html  
    cohort_new                              html  
    cohort_qc                               html  
    cohort_read                             html  
    cohort_save                             html  
    completeness                            html  
    corrections_log                         html  
    derive_log                              html  
    ensure_dir                              html  
    example_cohort                          html  
    join_metadata                           html  
    liftover_backends                       html  
    liftover_crossmap                       html  
    liftover_intervals                      html  
    liftover_rtracklayer                    html  
    liftover_vcf                            html  
    load_analyses                           html  
    load_analysis                           html  
    manifest_from_wide                      html  
    ortholog_babelgene                      html  
    ortholog_backends                       html  
    ortholog_genes                          html  
    orthologize                             html  
    project_path                            html  
    project_root                            html  
    qc_log                                  html  
    read_corrections                        html  
    read_dotenv                             html  
    read_manifest                           html  
    read_manifest_csv                       html  
    read_study_yaml                         html  
    register_liftover_backend               html  
    register_ortholog_backend               html  
    sample_pairs                            html  
    sample_sheet                            html  
    sample_sheet_templates                  html  
    samples                                 html  
    study_new                               html  
    subject_new                             html  
    subjects                                html  
    translate                               html  
    translation_report                      html  
    translation_stats                       html  
    validate_cohort                         html  
    validate_manifest                       html  
    write_manifest                          html  
    write_study_yaml                        html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biocohort)