* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘bioacoustics’ ...
** package ‘bioacoustics’ successfully unpacked and MD5 sums checked
** using staged installation
checking for gcc... gcc-13
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc-13 accepts -g... yes
checking for gcc-13 option to accept ISO C89... none needed
checking whether we are using the GNU C++ compiler... yes
checking whether g++-13 -std=gnu++17 accepts -g... yes
configure: CXX: g++-13 -std=gnu++17
checking for cmake... cmake
checking for g++-13 -std=gnu++17 option to support OpenMP... -fopenmp
checking for gcc-13 option to support OpenMP... -fopenmp
checking how to run the C preprocessor... gcc-13 -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking fftw3.h usability... yes
checking fftw3.h presence... yes
checking for fftw3.h... yes
checking for library containing fftw_plan_r2r_1d... -lfftw3
configure: Suitable fftw3 library found.
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-25) 13.2.0’
using C++11
make[1]: Entering directory '/tmp/Rtmp5AmNre/R.INSTALL3716110c9ba6/bioacoustics/src'
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -g -O2 -Wall -pedantic -mtune=native  -std=gnu++11 -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -g -O2 -Wall -pedantic -mtune=native  -std=gnu++11 -fpic  -g -O2 -Wall -pedantic -mtune=native   -c bat_bioacoustics.cpp -o bat_bioacoustics.o
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -g -O2 -Wall -pedantic -mtune=native  -std=gnu++11 -fpic  -g -O2 -Wall -pedantic -mtune=native   -c bat_classify.cpp -o bat_classify.o
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -g -O2 -Wall -pedantic -mtune=native  -std=gnu++11 -fpic  -g -O2 -Wall -pedantic -mtune=native   -c bb_analyse.cpp -o bb_analyse.o
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -g -O2 -Wall -pedantic -mtune=native  -std=gnu++11 -fpic  -g -O2 -Wall -pedantic -mtune=native   -c bb_detect.cpp -o bb_detect.o
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -g -O2 -Wall -pedantic -mtune=native  -std=gnu++11 -fpic  -g -O2 -Wall -pedantic -mtune=native   -c bb_extract.cpp -o bb_extract.o
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -g -O2 -Wall -pedantic -mtune=native  -std=gnu++11 -fpic  -g -O2 -Wall -pedantic -mtune=native   -c bc_blob_finder.cpp -o bc_blob_finder.o
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -g -O2 -Wall -pedantic -mtune=native  -std=gnu++11 -fpic  -g -O2 -Wall -pedantic -mtune=native   -c bc_features.cpp -o bc_features.o
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -g -O2 -Wall -pedantic -mtune=native  -std=gnu++11 -fpic  -g -O2 -Wall -pedantic -mtune=native   -c bc_img_processing.cpp -o bc_img_processing.o
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -g -O2 -Wall -pedantic -mtune=native  -std=gnu++11 -fpic  -g -O2 -Wall -pedantic -mtune=native   -c fft.cpp -o fft.o
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -g -O2 -Wall -pedantic -mtune=native  -std=gnu++11 -fpic  -g -O2 -Wall -pedantic -mtune=native   -c read_wac.cpp -o read_wac.o
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -g -O2 -Wall -pedantic -mtune=native  -std=gnu++11 -fpic  -g -O2 -Wall -pedantic -mtune=native   -c spectro.cpp -o spectro.o
g++-13 -std=gnu++11 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o bioacoustics.so RcppExports.o bat_bioacoustics.o bat_classify.o bb_analyse.o bb_detect.o bb_extract.o bc_blob_finder.o bc_features.o bc_img_processing.o fft.o read_wac.o spectro.o -lfftw3 -fopenmp -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmp5AmNre/R.INSTALL3716110c9ba6/bioacoustics/src'
make[1]: Entering directory '/tmp/Rtmp5AmNre/R.INSTALL3716110c9ba6/bioacoustics/src'
make[1]: Leaving directory '/tmp/Rtmp5AmNre/R.INSTALL3716110c9ba6/bioacoustics/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-bioacoustics/00new/bioacoustics/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘bioacoustics’
    finding HTML links ... done
    bioacoustics-package                    html  
    blob_detection                          html  
    dot-parse.timestamp                     html  
    file_checks                             html  
    file_type_guess                         html  
    fspec                                   html  
    guano_md                                html  
    metadata                                html  
    mp3_to_wav                              html  
    myotis                                  html  
    plot_zc                                 html  
    read_audio                              html  
    finding level-2 HTML links ... done

    read_mp3                                html  
    read_wac                                html  
    read_wav                                html  
    read_zc                                 html  
    rotate90                                html  
    spectro                                 html  
    threshold_detection                     html  
    to_dB                                   html  
    write_zc                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* creating tarball
packaged installation of ‘bioacoustics’ as ‘bioacoustics_0.2.8_R_x86_64-pc-linux-gnu.tar.gz’
* DONE (bioacoustics)