* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘bifrost’ ...
** this is package ‘bifrost’ version ‘0.2.0’
** package ‘bifrost’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘bifrost’
    finding HTML links ... done
    as.data.frame.bifrost_search_tuning_grid
                                            html  
    as.data.frame.bifrost_search_tuning_selection
                                            html  
    as.data.frame.bifrost_shift_recovery_evaluation
                                            html  
    as.data.frame.bifrost_simulation_study
                                            html  
    as.data.frame.regime_correlation_pca    html  
    as.data.frame.regime_integration_relationships
                                            html  
    as.data.frame.regime_module_diagnostics
                                            html  
    bifrost_example_file                    html  
    bootstrap_rate_distribution             html  
    compare_shift_magnitudes                html  
    createSimulationTemplate                html  
    distribution-fit-data-frames            html  
    evaluateShiftRecovery                   html  
    fisher_z_transform                      html  
    fit_rate_distribution                   html  
    fit_regime_covariance_runs              html  
    fit_regime_covariances                  html  
    fit_waiting_time_distribution           html  
    generateViridisColorScale               html  
    icTrajectory                            html  
    lineage_rates                           html  
    plot.icTrajectory                       html  
    plot.rateMap                            html  
    plot.rate_distribution_fit              html  
    plot.regime_correlation_pca             html  
    plot.regime_integration_relationships   html  
    plot.regime_module_diagnostics          html  
    plot.shift_magnitude_comparison         html  
    plot.shift_magnitude_comparison_set     html  
    plot.shift_magnitude_count_set          html  
    plot.shift_magnitude_counts             html  
    print.bifrost_search                    html  
    print.bifrost_search_tuning_grid        html  
    print.bifrost_search_tuning_selection   html  
    print.bifrost_shift_recovery_evaluation
                                            html  
    print.bifrost_simulation_study          html  
    print.bifrost_simulation_template       html  
    print.rateMap                           html  
    rateMap                                 html  
    rateMapControl                          html  
    rateMapRateFlags                        html  
    rateMapView                             html  
    regime_correlation_pca                  html  
    regime_integration_pgls                 html  
    regime_integration_relationships        html  
    regime_module_diagnostics               html  
    runFalsePositiveSimulationStudy         html  
    runSearchTuningGrid                     html  
    runShiftRecoverySimulationStudy         html  
    searchOptimalConfiguration              html  
    selectTunedSearchParameters             html  
    shift_magnitude_counts                  html  
    shift_magnitude_groups                  html  
    shift_node_marks                        html  
    shift_transitions                       html  
    shift_waiting_times                     html  
    simulateNullDataset                     html  
    simulateShiftedDataset                  html  
    summarize_regime_covariance_runs        html  
    summarize_regime_covariances            html  
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bifrost)