* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘bfp’ ...
** package ‘bfp’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’
using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’
make[1]: Entering directory '/tmp/RtmpWReyCF/R.INSTALLde92b59d5b230/bfp/src'
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -D R_NO_REMAP -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c hyp2f1.c -o hyp2f1.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -D R_NO_REMAP -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mtherr.c -o mtherr.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -D R_NO_REMAP -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -Inewmat -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesMfp.cpp -o bayesMfp.o
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include/RcppCommon.h:30,
from rcppExport.h:11,
from dataStructure.h:11,
from bayesMfp.cpp:4:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include/Rcpp/r/headers.h:26: warning: "R_NO_REMAP" redefined
26 | #define R_NO_REMAP
|
<command-line>: note: this is the location of the previous definition
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -D R_NO_REMAP -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -Inewmat -fpic -g -O2 -Wall -pedantic -mtune=native -c dataStructure.cpp -o dataStructure.o
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include/RcppCommon.h:30,
from rcppExport.h:11,
from dataStructure.h:11,
from dataStructure.cpp:1:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include/Rcpp/r/headers.h:26: warning: "R_NO_REMAP" redefined
26 | #define R_NO_REMAP
|
<command-line>: note: this is the location of the previous definition
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -D R_NO_REMAP -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -Inewmat -fpic -g -O2 -Wall -pedantic -mtune=native -c hyperg.cpp -o hyperg.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -D R_NO_REMAP -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -Inewmat -fpic -g -O2 -Wall -pedantic -mtune=native -c combinatorics.cpp -o combinatorics.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -D R_NO_REMAP -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -Inewmat -fpic -g -O2 -Wall -pedantic -mtune=native -c RnewMat.cpp -o RnewMat.o
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include/RcppCommon.h:30,
from rcppExport.h:11,
from dataStructure.h:11,
from RnewMat.cpp:2:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include/Rcpp/r/headers.h:26: warning: "R_NO_REMAP" redefined
26 | #define R_NO_REMAP
|
<command-line>: note: this is the location of the previous definition
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -D R_NO_REMAP -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -Inewmat -fpic -g -O2 -Wall -pedantic -mtune=native -c conversions.cpp -o conversions.o
rm: cannot remove '*.a': No such file or directory
make[1]: [Makevars:31: subclean] Error 1 (ignored)
(cd newmat && MkInclude="/home/hornik/tmp/R.check/r-patched-gcc/Work/build/etc/Makeconf" make clean) || exit 1;
make[2]: Entering directory '/tmp/RtmpWReyCF/R.INSTALLde92b59d5b230/bfp/src/newmat'
rm -f -r .libs _libs libnewmat.a
rm -f newmat1.o newmat2.o newmat3.o newmat4.o newmat5.o newmat6.o newmat7.o newmat8.o newmatex.o bandmat.o submat.o myexcept.o cholesky.o evalue.o fft.o hholder.o jacobi.o newfft.o sort.o svd.o nm_misc.o newmatrm.o newmat9.o
make[2]: Leaving directory '/tmp/RtmpWReyCF/R.INSTALLde92b59d5b230/bfp/src/newmat'
(cd newmat && CFLAGS="-g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native " CXXFLAGS="-g -O2 -Wall -pedantic -mtune=native " MAKE="make -f \"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/etc/Makeconf\" -f Makefile" make -f "/home/hornik/tmp/R.check/r-patched-gcc/Work/build/etc/Makeconf" -f Makefile library) || exit 1;
make[2]: Entering directory '/tmp/RtmpWReyCF/R.INSTALLde92b59d5b230/bfp/src/newmat'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c newmat1.cpp -o newmat1.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c newmat2.cpp -o newmat2.o
newmat2.cpp: In member function ‘void MatrixRowCol::Add(const MatrixRowCol&)’:
newmat2.cpp:41:4: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
41 | if (f < skip) f = skip; if (l > lx) l = lx; l -= f;
| ^~
newmat2.cpp:41:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
41 | if (f < skip) f = skip; if (l > lx) l = lx; l -= f;
| ^~
newmat2.cpp: In member function ‘void MatrixRowCol::AddScaled(const MatrixRowCol&, Real)’:
newmat2.cpp:52:4: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
52 | if (f < skip) f = skip; if (l > lx) l = lx; l -= f;
| ^~
newmat2.cpp:52:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
52 | if (f < skip) f = skip; if (l > lx) l = lx; l -= f;
| ^~
newmat2.cpp: In member function ‘void MatrixRowCol::Sub(const MatrixRowCol&)’:
newmat2.cpp:63:4: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
63 | if (f < skip) f = skip; if (l > lx) l = lx; l -= f;
| ^~
newmat2.cpp:63:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
63 | if (f < skip) f = skip; if (l > lx) l = lx; l -= f;
| ^~
newmat2.cpp: In member function ‘void MatrixRowCol::Inject(const MatrixRowCol&)’:
newmat2.cpp:74:4: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
74 | if (f < skip) f = skip; if (l > lx) l = lx; l -= f;
| ^~
newmat2.cpp:74:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
74 | if (f < skip) f = skip; if (l > lx) l = lx; l -= f;
| ^~
newmat2.cpp: In function ‘Real DotProd(const MatrixRowCol&, const MatrixRowCol&)’:
newmat2.cpp:85:4: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
85 | if (f < f2) f = f2; if (l > l2) l = l2; l -= f;
| ^~
newmat2.cpp:85:24: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
85 | if (f < f2) f = f2; if (l > l2) l = l2; l -= f;
| ^~
newmat2.cpp: In member function ‘void MatrixRowCol::Add(const MatrixRowCol&, const MatrixRowCol&)’:
newmat2.cpp:99:4: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
99 | if (f1<f) f1=f; if (l1>l) l1=l;
| ^~
newmat2.cpp:99:20: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
99 | if (f1<f) f1=f; if (l1>l) l1=l;
| ^~
newmat2.cpp:101:4: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
101 | if (f2<f) f2=f; if (l2>l) l2=l;
| ^~
newmat2.cpp:101:20: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
101 | if (f2<f) f2=f; if (l2>l) l2=l;
| ^~
newmat2.cpp: In member function ‘void MatrixRowCol::Sub(const MatrixRowCol&, const MatrixRowCol&)’:
newmat2.cpp:171:4: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
171 | if (f1<f) f1=f; if (l1>l) l1=l;
| ^~
newmat2.cpp:171:20: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
171 | if (f1<f) f1=f; if (l1>l) l1=l;
| ^~
newmat2.cpp:173:4: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
173 | if (f2<f) f2=f; if (l2>l) l2=l;
| ^~
newmat2.cpp:173:20: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
173 | if (f2<f) f2=f; if (l2>l) l2=l;
| ^~
newmat2.cpp: In member function ‘void MatrixRowCol::Multiply(const MatrixRowCol&, const MatrixRowCol&)’:
newmat2.cpp:335:4: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
335 | if (f1<f) f1=f; if (l1>l) l1=l;
| ^~
newmat2.cpp:335:20: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
335 | if (f1<f) f1=f; if (l1>l) l1=l;
| ^~
newmat2.cpp:337:4: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
337 | if (f2<f) f2=f; if (l2>l) l2=l;
| ^~
newmat2.cpp:337:20: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
337 | if (f2<f) f2=f; if (l2>l) l2=l;
| ^~
newmat2.cpp:339:4: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
339 | if (f1<f2) f1 = f2; if (l1>l2) l1 = l2;
| ^~
newmat2.cpp:339:24: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
339 | if (f1<f2) f1 = f2; if (l1>l2) l1 = l2;
| ^~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c newmat3.cpp -o newmat3.o
newmat3.cpp: In member function ‘virtual void SymmetricBandMatrix::GetRow(MatrixRowCol&)’:
newmat3.cpp:670:7: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
670 | if (s>0) w -= s; mrc.storage = w; int w2 = w-w1;
| ^~
newmat3.cpp:670:24: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
670 | if (s>0) w -= s; mrc.storage = w; int w2 = w-w1;
| ^~~
newmat3.cpp: In member function ‘virtual void SymmetricBandMatrix::GetCol(MatrixRowCol&)’:
newmat3.cpp:711:7: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
711 | if (s>0) w -= s; mrc.storage = w; int w2 = w-w1;
| ^~
newmat3.cpp:711:24: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
711 | if (s>0) w -= s; mrc.storage = w; int w2 = w-w1;
| ^~~
newmat3.cpp: In member function ‘virtual void SymmetricBandMatrix::GetCol(MatrixColX&)’:
newmat3.cpp:761:7: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
761 | if (s>0) w -= s; mrc.storage = w; int w2 = w-w1;
| ^~
newmat3.cpp:761:24: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
761 | if (s>0) w -= s; mrc.storage = w; int w2 = w-w1;
| ^~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c newmat4.cpp -o newmat4.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c newmat5.cpp -o newmat5.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c newmat6.cpp -o newmat6.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c newmat7.cpp -o newmat7.o
newmat7.cpp: In member function ‘virtual GeneralMatrix* AddedMatrix::Evaluate(MatrixType)’:
newmat7.cpp:554:13: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
554 | if (!c1) gm1->tDelete(); if (!c2) gm2->tDelete();
| ^~
newmat7.cpp:554:38: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
554 | if (!c1) gm1->tDelete(); if (!c2) gm2->tDelete();
| ^~
newmat7.cpp:558:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
558 | if (!c1) gm1->tDelete(); if (!c2) gm2->tDelete();
| ^~
newmat7.cpp:558:35: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
558 | if (!c1) gm1->tDelete(); if (!c2) gm2->tDelete();
| ^~
newmat7.cpp: In member function ‘virtual GeneralMatrix* SubtractedMatrix::Evaluate(MatrixType)’:
newmat7.cpp:618:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
618 | if (!c1) gm1->tDelete(); gmx = gm2;
| ^~
newmat7.cpp:618:35: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
618 | if (!c1) gm1->tDelete(); gmx = gm2;
| ^~~
newmat7.cpp:627:13: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
627 | if (!c1) gm1->tDelete(); if (!c2) gm2->tDelete();
| ^~
newmat7.cpp:627:38: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
627 | if (!c1) gm1->tDelete(); if (!c2) gm2->tDelete();
| ^~
newmat7.cpp:631:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
631 | if (!c1) gm1->tDelete(); if (!c2) gm2->tDelete();
| ^~
newmat7.cpp:631:35: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
631 | if (!c1) gm1->tDelete(); if (!c2) gm2->tDelete();
| ^~
newmat7.cpp: In member function ‘virtual GeneralMatrix* SPMatrix::Evaluate(MatrixType)’:
newmat7.cpp:697:13: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
697 | if (!c1) gm1->tDelete(); if (!c2) gm2->tDelete();
| ^~
newmat7.cpp:697:38: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
697 | if (!c1) gm1->tDelete(); if (!c2) gm2->tDelete();
| ^~
newmat7.cpp:701:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
701 | if (!c1) gm1->tDelete(); if (!c2) gm2->tDelete();
| ^~
newmat7.cpp:701:35: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
701 | if (!c1) gm1->tDelete(); if (!c2) gm2->tDelete();
| ^~
newmat7.cpp: In function ‘bool RealEqual(Real*, Real*, int)’:
newmat7.cpp:781:7: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
781 | if (*s1++ != *s2++) return false; if (*s1++ != *s2++) return false;
| ^~
newmat7.cpp:781:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
781 | if (*s1++ != *s2++) return false; if (*s1++ != *s2++) return false;
| ^~
newmat7.cpp:782:7: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
782 | if (*s1++ != *s2++) return false; if (*s1++ != *s2++) return false;
| ^~
newmat7.cpp:782:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
782 | if (*s1++ != *s2++) return false; if (*s1++ != *s2++) return false;
| ^~
newmat7.cpp: In function ‘bool intEqual(int*, int*, int)’:
newmat7.cpp:793:7: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
793 | if (*s1++ != *s2++) return false; if (*s1++ != *s2++) return false;
| ^~
newmat7.cpp:793:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
793 | if (*s1++ != *s2++) return false; if (*s1++ != *s2++) return false;
| ^~
newmat7.cpp:794:7: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
794 | if (*s1++ != *s2++) return false; if (*s1++ != *s2++) return false;
| ^~
newmat7.cpp:794:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
794 | if (*s1++ != *s2++) return false; if (*s1++ != *s2++) return false;
| ^~
newmat7.cpp: In member function ‘bool GeneralMatrix::is_zero() const’:
newmat7.cpp:871:7: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
871 | if (*s++) return false; if (*s++) return false;
| ^~
newmat7.cpp:871:31: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
871 | if (*s++) return false; if (*s++) return false;
| ^~
newmat7.cpp:872:7: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
872 | if (*s++) return false; if (*s++) return false;
| ^~
newmat7.cpp:872:31: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
872 | if (*s++) return false; if (*s++) return false;
| ^~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c newmat8.cpp -o newmat8.o
newmat8.cpp: In member function ‘virtual LogAndSign CroutMatrix::log_determinant() const’:
newmat8.cpp:715:4: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
715 | if (!d) sum.ChangeSign(); return sum;
| ^~
newmat8.cpp:715:30: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
715 | if (!d) sum.ChangeSign(); return sum;
| ^~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c newmatex.cpp -o newmatex.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bandmat.cpp -o bandmat.o
bandmat.cpp: In member function ‘virtual LogAndSign BandLUMatrix::log_determinant() const’:
bandmat.cpp:362:4: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
362 | if (!d) sum.ChangeSign(); return sum;
| ^~
bandmat.cpp:362:30: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
362 | if (!d) sum.ChangeSign(); return sum;
| ^~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c submat.cpp -o submat.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c myexcept.cpp -o myexcept.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c cholesky.cpp -o cholesky.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c evalue.cpp -o evalue.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c fft.cpp -o fft.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c hholder.cpp -o hholder.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c jacobi.cpp -o jacobi.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c newfft.cpp -o newfft.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c sort.cpp -o sort.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c svd.cpp -o svd.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c nm_misc.cpp -o nm_misc.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c newmatrm.cpp -o newmatrm.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c newmat9.cpp -o newmat9.o
ar -rucs libnewmat.a newmat1.o newmat2.o newmat3.o newmat4.o newmat5.o newmat6.o newmat7.o newmat8.o newmatex.o bandmat.o submat.o myexcept.o cholesky.o evalue.o fft.o hholder.o jacobi.o newfft.o sort.o svd.o nm_misc.o newmatrm.o newmat9.o
ar: `u' modifier ignored since `D' is the default (see `U')
make[2]: Leaving directory '/tmp/RtmpWReyCF/R.INSTALLde92b59d5b230/bfp/src/newmat'
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o bfp.so hyp2f1.o mtherr.o bayesMfp.o dataStructure.o hyperg.o combinatorics.o RnewMat.o conversions.o -Lnewmat -lnewmat -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpWReyCF/R.INSTALLde92b59d5b230/bfp/src'
make[1]: Entering directory '/tmp/RtmpWReyCF/R.INSTALLde92b59d5b230/bfp/src'
make[1]: Leaving directory '/tmp/RtmpWReyCF/R.INSTALLde92b59d5b230/bfp/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-bfp/00new/bfp/libs
** R
** data
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘bfp’
finding HTML links ... done
BayesMfp html
BayesMfpMethods html
BmaSamples html
BmaSamplesMethods html
Extract.BayesMfp html
as.data.frame.BayesMfp html
bmaPredict html
constructNewdataMatrix html
empiricalHpd html
findModel html
fpScale html
getDesignMatrix html
getFpTransforms html
getLogMargLik html
getLogPrior html
getPostExpectedgAndShrinkage html
getPosteriorParms html
inclusionProbs html
invGamma html
ozone html
plotCurveEstimate html
posteriors html
predict.BayesMfp html
predict.BmaSamples html
rmvt html
rshrinkage html
scrBesag html
scrHpd html
summary.BayesMfp html
summary.BmaSamples html
transformMfp html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bfp)