* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘beyondWhittle’ ...
** package ‘beyondWhittle’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-23) 13.2.0’
using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’
make[1]: Entering directory '/tmp/RtmpRSNS12/R.INSTALL12388379eef5e0/beyondWhittle/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c a_gamma_process_prior.cpp -o a_gamma_process_prior.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c arma.cpp -o arma.o
arma.cpp: In function ‘Rcpp::NumericMatrix pacf2AR(Rcpp::NumericVector)’:
arma.cpp:34:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
34 | for (int r=1; r <= p-j; ++r) {
| ~~^~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bernstein_gamma_psd.cpp -o bernstein_gamma_psd.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c gibbs_np_help.cpp -o gibbs_np_help.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c gibbs_vnp_algorithm.cpp -o gibbs_vnp_algorithm.o
gibbs_vnp_algorithm.cpp: In function ‘Rcpp::List gibbs_multivariate_nuisance_cpp(arma::mat, Rcpp::IntegerVector, arma::cx_mat, Rcpp::NumericVector, Rcpp::NumericVector, Rcpp::NumericVector, int, arma::vec, arma::vec, arma::mat, arma::vec, double, double, arma::cx_mat, int, int, double, bool, int, double, Rcpp::List)’:
gibbs_vnp_algorithm.cpp:51:13: warning: unused variable ‘n’ [-Wunused-variable]
51 | const int n=data.n_rows;
| ^
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c gibbs_vnp_help.cpp -o gibbs_vnp_help.o
gibbs_vnp_help.cpp: In function ‘double llike_whittle(const arma::cx_mat&, const arma::cx_cube&)’:
gibbs_vnp_help.cpp:56:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
56 | for (unsigned j=1; j < N-1; ++j) {
| ~~^~~~~
gibbs_vnp_help.cpp: In function ‘arma::cx_mat mdft_cpp(const arma::mat&)’:
gibbs_vnp_help.cpp:94:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare]
94 | for (unsigned j=1; j<n; ++j) {
| ~^~
gibbs_vnp_help.cpp: In function ‘void mean_center(arma::mat&)’:
gibbs_vnp_help.cpp:113:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
113 | for (int j=0; j<x.n_rows; ++j) {
| ~^~~~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c matrix_cube.cpp -o matrix_cube.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c misc.cpp -o misc.o
misc.cpp: In function ‘Rcpp::NumericMatrix acvMatrix(Rcpp::NumericVector)’:
misc.cpp:13:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
13 | for (int i=0; i < p; ++i) {
| ~~^~~
misc.cpp:14:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
14 | for (int j=0; j < p; ++j) {
| ~~^~~
misc.cpp: In function ‘arma::mat acvBlockMatrix(arma::mat)’:
misc.cpp:30:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare]
30 | for (int i=0; i < p; ++i) {
| ~~^~~
misc.cpp:31:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare]
31 | for (int j=0; j < p; ++j) {
| ~~^~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c qpsd_cal_cpp_expedited.cpp -o qpsd_cal_cpp_expedited.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c registerDynamicSymbol.c -o registerDynamicSymbol.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c unit_trace.cpp -o unit_trace.o
unit_trace.cpp: In function ‘arma::cx_mat unit_trace_U_from_phi_cpp(const arma::vec&)’:
unit_trace.cpp:38:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare]
38 | for (int i=0; i<d; ++i) {
| ~^~
unit_trace.cpp: In function ‘arma::cx_mat unit_trace_L_from_x(arma::vec)’:
unit_trace.cpp:88:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare]
88 | for (int i=0; i<d; ++i) {
| ~^~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c varma.cpp -o varma.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o beyondWhittle.so RcppExports.o a_gamma_process_prior.o arma.o bernstein_gamma_psd.o gibbs_np_help.o gibbs_vnp_algorithm.o gibbs_vnp_help.o matrix_cube.o misc.o qpsd_cal_cpp_expedited.o registerDynamicSymbol.o unit_trace.o varma.o -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpRSNS12/R.INSTALL12388379eef5e0/beyondWhittle/src'
make[1]: Entering directory '/tmp/RtmpRSNS12/R.INSTALL12388379eef5e0/beyondWhittle/src'
make[1]: Leaving directory '/tmp/RtmpRSNS12/R.INSTALL12388379eef5e0/beyondWhittle/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-beyondWhittle/00new/beyondWhittle/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘beyondWhittle’
finding HTML links ... done
Adj html
PSIwgt html
VARMAcov_muted html
VAR_regressor_matrix html
acceptanceRate html
acvBlockMatrix html
acvMatrix html
arma_conditional html
bayes_factor html
bayes_factor.bdp_dw_result html
bdp_dw_bayes_factor_k1 html
bdp_dw_est_post_stats html
bdp_dw_mcmc html
bdp_dw_mcmc_params_gen html
bdp_dw_prior_params_gen html
betaBasis_k html
betaBasis_k_dw html
beyondWhittle-package html
center html
coarsened_bernstein html
coarsened_bernstein_i html
complexValuedPsd html
cube_from_NumericVector html
cx_cube_from_ComplexVector html
dbList html
dbList_dw_Bern html
dbList_dw_Bern_for_lambda html
densityMixture html
epsilon_var html
fast_ft html
fast_ift html
fast_mean html
fourier_freq html
genEpsARMAC html
get_U_cpp html
get_f_matrix html
gibbs_AR_nuisance_intern html
gibbs_VAR_nuisance_intern html
gibbs_ar html
gibbs_bdp_dw html
gibbs_multivariate_nuisance html
gibbs_multivariate_nuisance_cpp html
gibbs_np html
gibbs_npc html
gibbs_nuisance html
gibbs_var html
gibbs_vnp html
hasEigenValueSmallerZero html
is_hpd html
is_quadratic html
is_spd html
lik_ar html
llike html
llike_AR html
llike_dw html
llike_var html
llike_var_full html
llike_var_partial html
local_moving_FT_zigzag html
logDet_stickBreaking html
logfuller html
lpost html
lpost_AR html
lprior html
lprior_AR html
lprior_dw html
mdft html
midft html
missingValues_str_help html
mixtureWeight html
mpdgrm html
my_rdirichlet html
nll_norm html
omegaFreq html
pFromV html
pacf2AR html
pacf_to_ar html
phiFromBeta_normalInverseWishart html
plot.bdp_dw_result html
plot.bdp_dw_tv_psd html
plot.gibbs_psd html
plotMPsd html
print.bdp_dw_result html
print.gibbs_psd html
print_mcmc_state html
print_summary_gibbs_psd_help html
print_warn html
psd_arma html
psd_array html
psd_dummy_model html
psd_tvarma12 html
psd_varma html
psd_varma_help html
qpsd html
qpsd_dw html
qpsd_dw.tilde_zigzag_cpp_expedited html
realValuedPsd html
rmvnorm html
scree_type_ar html
sim_tvarma12 html
sim_varma html
sldmvnorm html
summary.bdp_dw_result html
summary.gibbs_psd html
transfer_polynomial html
uci_help html
uci_matrix html
uniformmax html
uniformmax_help html
uniformmax_multi html
unit_trace_I_l html
unit_trace_L_from_x html
unit_trace_U_from_phi html
unit_trace_log_c html
unit_trace_log_d html
unit_trace_log_f_l html
unit_trace_mu html
unit_trace_nu html
unit_trace_p html
unit_trace_q html
unit_trace_runif html
unit_trace_runif_single html
unit_trace_sigma2 html
unit_trace_x_from_phi html
unrollPsd html
vFromP html
varma_transfer2psd html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (beyondWhittle)