* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘bexy’ ...
** this is package ‘bexy’ version ‘0.1.3’
** package ‘bexy’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘bexy’
    finding HTML links ... done
    bexy                                    html  
    dot-addLegend.bexy                      html  
    dot-addLegendAutosomalTrisomy.bexy      html  
    dot-getAllPossibleAutosomalTrisomy.bexy
                                            html  
    dot-getAllPossibleScaffoldTypes.bexy    html  
    dot-getAllPossibleSexKaryotypes.bexy    html  
    dot-getColumns.bexy                     html  
    dot-getIndexScaffold.bexy               html  
    dot-getIndexScaffoldAutosomalTrisomy.bexy
                                            html  
    dot-getInputTernary.bexy                html  
    dot-getSamplesToHighlight.bexy          html  
    dot-getSamplesToHighlightAutosomalTrisomy.bexy
                                            html  
    dot-getScaffoldNames.bexy               html  
    dot-getStringWidth.bexy                 html  
    dot-openFile.bexy                       html  
    dot-plotAutosomalTrisomy.bexy           html  
    dot-plotTernary.bexy                    html  
    dot-plotTernaryAndTicTacToe.bexy        html  
    dot-plotTicTacToeWithCoordinates.bexy   html  
    dot-plotXVsY.bexy                       html  
    dot-renameHeader.bexy                   html  
    getPosteriorMeanRho                     html  
    getPosteriorModeAutosomalTrisomy        html  
    getPosteriorModeScaffoldTypes           html  
    getPosteriorModeSexKaryotypes           html  
    getSamplesWithAutosomalTrisomy          html  
    getSamplesWithThisKaryotype             html  
    getScaffoldsWithThisType                html  
    plot.bexy                               html  
    plotAutosomalTrisomy                    html  
    plotAutosomalTrisomyCounts              html  
    plotAutosomalTrisomyPosteriorProbabilities
                                            html  
    plotBars                                html  
    plotCounts                              html  
    plotMCMCTrace                           html  
    plotTernary                             html  
    print.bexy                              html  
    summary.bexy                            html  
    writePosteriorModeAutosomalTrisomies    html  
    writePosteriorModeScaffoldTypes         html  
    writePosteriorModeSexKaryotypes         html  
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bexy)