- using R version 4.4.1 Patched (2024-08-05 r86980)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-14 (Debian 14.2.0-3) 14.2.0
GNU Fortran (Debian 14.2.0-3) 14.2.0
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘betapart/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘betapart’ version ‘1.6’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking serialization versions ... OK
- checking whether package ‘betapart’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [2s/3s] OK
- checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
- checking whether the package can be unloaded cleanly ... [2s/3s] OK
- checking whether the namespace can be loaded with stated dependencies ... [2s/3s] OK
- checking whether the namespace can be unloaded cleanly ... [2s/3s] OK
- checking loading without being on the library search path ... [2s/3s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [17s/22s] OK
- checking Rd files ... [1s/1s] NOTE
checkRd: (-1) beta.pair.Rd:46: Lost braces
46 | \code{\link{beta.pair.abund}}, code{\link{beta.multi}}, \code{\link{beta.sample}}, \code{\link{betapart.core}}, \code{\link{beta.temp}}
| ^
checkRd: (-1) betapart-package.Rd:36: Lost braces; missing escapes or markup?
36 | Andres Baselga, David Orme, Sebastien Villéger, Julien {De Bortoli}, Fabien Leprieur, Maxime Logez, Sara Martínez-Santalla, Ramiro Martín-Devasa, Carola Gómez-Rodríguez, and Rosa M. Crujeiras
| ^
checkRd: (-1) decay.model.Rd:22: Lost braces
22 | \item{y}{ code{dist} object, either containing similarities or dissimilarities between pairs of assemblages.}
| ^
checkRd: (-1) decay.model.Rd:23: Lost braces
23 | \item{x}{ code{dist} object, containing distances (spatial or other) between pairs of assemblages.}
| ^
checkRd: (-1) decay.model.Rd:26: Lost braces
26 | \item{y.type}{ polarity of the code{dist} object (i.e. 1 means total similarity or total dissimilarity),
| ^
checkRd: (-1) decay.model.Rd:35: Lost braces
35 | \item{data.y}{ original y data, code{dist} object, either containing similarities or dissimilarities between pairs of assemblages.}
| ^
checkRd: (-1) decay.model.Rd:36: Lost braces
36 | \item{data.x}{ original x data, code{dist} object, containing distances (spatial or other) between pairs of assemblages.}
| ^
checkRd: (-1) functional.betapart.core.pairwise.Rd:63-67: Lost braces in \itemize; meant \describe ?
checkRd: (-1) functional.betapart.core.pairwise.Rd:68-73: Lost braces in \itemize; meant \describe ?
checkRd: (-1) functional.betapart.core.pairwise.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) functional.betapart.core.pairwise.Rd:51-52: Lost braces in \itemize; \value handles \item{}{} directly
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/0s] OK
- checking data for ASCII and uncompressed saves ... OK
- checking examples ... [12s/21s] OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
zdep 4.169 0.007 5.865
- checking PDF version of manual ... [6s/9s] OK
- checking HTML version of manual ... [1s/3s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 NOTE