* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘bdsmatrix’ ...
** package ‘bdsmatrix’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’
make[1]: Entering directory '/tmp/Rtmpn6WmrC/R.INSTALL1d911449adc6f7/bdsmatrix/src'
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_init_bdsmatrix.c -o R_init_bdsmatrix.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bdsmatrix_index1.c -o bdsmatrix_index1.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bdsmatrix_index2.c -o bdsmatrix_index2.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bdsmatrix_index3.c -o bdsmatrix_index3.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bdsmatrix_prod.c -o bdsmatrix_prod.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bdsmatrix_prod2.c -o bdsmatrix_prod2.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bdsmatrix_prod3.c -o bdsmatrix_prod3.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bdsmatrix_prod4.c -o bdsmatrix_prod4.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c chinv4.c -o chinv4.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c chinv5.c -o chinv5.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cholesky4.c -o cholesky4.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cholesky5.c -o cholesky5.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c chsolve4.c -o chsolve4.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c chsolve5.c -o chsolve5.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dmatrix.c -o dmatrix.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gcback.c -o gcback.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gchol.c -o gchol.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gchol_bds.c -o gchol_bds.o
gchol_bds.c: In function ‘gchol_bdsinv’:
gchol_bds.c:103:13: warning: ‘mat’ may be used uninitialized [-Wmaybe-uninitialized]
103 | i = cholesky4(mat, n, nblock, bsize, dmat, *toler);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gchol_bds.c:85:14: note: ‘mat’ was declared here
85 | double **mat;
| ^~~
gchol_bds.c: In function ‘gchol_bdssolve’:
gchol_bds.c:150:13: warning: ‘mat’ may be used uninitialized [-Wmaybe-uninitialized]
150 | i = cholesky4(mat, n, nblock, bsize, blocks, *toler);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gchol_bds.c:132:14: note: ‘mat’ was declared here
132 | double **mat;
| ^~~
gcc-13 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o bdsmatrix.so R_init_bdsmatrix.o bdsmatrix_index1.o bdsmatrix_index2.o bdsmatrix_index3.o bdsmatrix_prod.o bdsmatrix_prod2.o bdsmatrix_prod3.o bdsmatrix_prod4.o chinv4.o chinv5.o cholesky4.o cholesky5.o chsolve4.o chsolve5.o dmatrix.o gcback.o gchol.o gchol_bds.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmpn6WmrC/R.INSTALL1d911449adc6f7/bdsmatrix/src'
make[1]: Entering directory '/tmp/Rtmpn6WmrC/R.INSTALL1d911449adc6f7/bdsmatrix/src'
make[1]: Leaving directory '/tmp/Rtmpn6WmrC/R.INSTALL1d911449adc6f7/bdsmatrix/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-bdsmatrix/00new/bdsmatrix/libs
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for ‘diag’ from package ‘base’ in package ‘bdsmatrix’
Creating a generic function for ‘diag<-’ from package ‘base’ in package ‘bdsmatrix’
Creating a new generic function for ‘backsolve’ in package ‘bdsmatrix’
** help
*** installing help indices
converting help for package ‘bdsmatrix’
finding HTML links ... done
as.matrix.bdsmatrix html
backsolve html
bdsBlock html
bdsI html
bdsmatrix-class html
bdsmatrix html
bdsmatrix.ibd html
bdsmatrix.reconcile html
gchol-class html
gchol html
gchol.bdsmatrix-class html
listbdsmatrix html
solve.bdsmatrix html
solve.gchol html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bdsmatrix)