* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘bbl’ ...
** this is package ‘bbl’ version ‘1.0.0’
** package ‘bbl’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.3.0-8) 14.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpvSjRqr/R.INSTALL23ed23669aabf0/bbl/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bfgs.cpp -o bfgs.o
bfgs.cpp: In function ‘void f12(int, const std::vector<std::vector<short int> >&, const std::vector<int>&, std::vector<double>&, std::vector<std::vector<double> >&, const std::vector<short int>&, bool, double)’:
bfgs.cpp:367:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
367 | for(unsigned int l1=0; l1<Lj; l1++){
| ~~^~~
bfgs.cpp:375:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
375 | for(unsigned int l1=0; l1<Lj; l1++)
| ~~^~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c invc.cpp -o invc.o
invc.cpp: In function ‘void invC(const std::vector<std::vector<short int> >&, const std::vector<int>&, const std::vector<short int>&, double&, double&, std::vector<std::vector<double> >&, std::vector<std::vector<std::vector<double> > >&, double, double)’:
invc.cpp:61:27: warning: ‘A’ may be used uninitialized [-Wmaybe-uninitialized]
61 | gsl_matrix_set(A, idx, jdx++, x);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
invc.cpp:30:15: note: ‘A’ was declared here
30 | gsl_matrix *A;
| ^
invc.cpp:69:25: warning: ‘Ai’ may be used uninitialized [-Wmaybe-uninitialized]
69 | gsl_linalg_LU_invert(A,perm,Ai);
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
invc.cpp:31:15: note: ‘Ai’ was declared here
31 | gsl_matrix *Ai;
| ^~
invc.cpp:68:25: warning: ‘perm’ may be used uninitialized [-Wmaybe-uninitialized]
68 | gsl_linalg_LU_decomp(A,perm,&s);
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
invc.cpp:32:20: note: ‘perm’ was declared here
32 | gsl_permutation *perm;
| ^~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c mfwrapper.cpp -o mfwrapper.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c pseudo_mle.cpp -o pseudo_mle.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o bbl.so RcppExports.o bfgs.o invc.o mfwrapper.o pseudo_mle.o -lgsl -lgslcblas -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpvSjRqr/R.INSTALL23ed23669aabf0/bbl/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpvSjRqr/R.INSTALL23ed23669aabf0/bbl/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpvSjRqr/R.INSTALL23ed23669aabf0/bbl/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-bbl/00new/bbl/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘bbl’
finding HTML links ... done
bbl html
bbl.fit html
crossVal html
fitted.bbl html
formula.bbl html
freq2raw html
logLik.bbl html
mcSample html
mlestimate html
model.frame.bbl html
nobs.bbl html
plot.bbl html
plot.cv.bbl html
predict.bbl html
predict.cv.bbl html
print.bbl html
print.cv.bbl html
print.summary.bbl html
randompar html
randomsamp html
readFasta html
removeConst html
residuals.bbl html
sample_xi html
summary.bbl html
weights.bbl html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bbl)