* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘bbknnR’ ...
** package ‘bbknnR’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-25) 13.2.0’
make[1]: Entering directory '/tmp/RtmpWgLj0c/R.INSTALLea983750a675c/bbknnR/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c data_manipulation.cpp -o data_manipulation.o
data_manipulation.cpp: In function ‘void trimming_cpp(Rcpp::NumericVector&, Rcpp::IntegerVector&, Rcpp::IntegerVector&, int)’:
data_manipulation.cpp:101:28: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  101 |   for (size_t col = 0; col < ncol; ++col) {
      |                        ~~~~^~~~~~
data_manipulation.cpp:103:31: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Rcpp::traits::storage_type<13>::type’ {aka ‘int’} [-Wsign-compare]
  103 |     for (size_t i = p[col]; i < p[col + 1]; ++i) {
data_manipulation.cpp:104:20: warning: comparison of integer expressions of different signedness: ‘std::priority_queue<double, std::vector<double>, std::greater<double> >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  104 |       if (q.size() < trim) {
      |           ~~~~~~~~~^~~~~~
data_manipulation.cpp:120:28: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  120 |   for (size_t col = 0; col < ncol; ++col) {
      |                        ~~~~^~~~~~
data_manipulation.cpp:122:31: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Rcpp::traits::storage_type<13>::type’ {aka ‘int’} [-Wsign-compare]
  122 |     for (size_t i = p[col]; i < p[col + 1]; ++i) {
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o bbknnR.so RcppExports.o data_manipulation.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpWgLj0c/R.INSTALLea983750a675c/bbknnR/src'
make[1]: Entering directory '/tmp/RtmpWgLj0c/R.INSTALLea983750a675c/bbknnR/src'
make[1]: Leaving directory '/tmp/RtmpWgLj0c/R.INSTALLea983750a675c/bbknnR/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-bbknnR/00new/bbknnR/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘bbknnR’
    finding HTML links ... done
    RidgeRegression                         html  
    RunBBKNN                                html  
    bbknnR-package                          html  
    panc8_small                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* creating tarball
packaged installation of ‘bbknnR’ as ‘bbknnR_1.1.1_R_x86_64-pc-linux-gnu.tar.gz’
* DONE (bbknnR)