* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘bayestransmission’ ...
** this is package ‘bayestransmission’ version ‘0.1.0’
** package ‘bayestransmission’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.3.0-10) 14.3.0’
using C++17
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmphUmptI/R.INSTALL3657768ae5f81/bayestransmission/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c CodeToEvent.cpp -o CodeToEvent.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c infect/infect_AbxCoding.cpp -o infect/infect_AbxCoding.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c infect/infect_AbxLocationState.cpp -o infect/infect_AbxLocationState.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c infect/infect_AbxPatientState.cpp -o infect/infect_AbxPatientState.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c infect/infect_CountLocationState.cpp -o infect/infect_CountLocationState.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c infect/infect_Episode.cpp -o infect/infect_Episode.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c infect/infect_EpisodeHistory.cpp -o infect/infect_EpisodeHistory.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c infect/infect_Event.cpp -o infect/infect_Event.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c infect/infect_Facility.cpp -o infect/infect_Facility.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c infect/infect_HistoryLink.cpp -o infect/infect_HistoryLink.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c infect/infect_LocationState.cpp -o infect/infect_LocationState.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c infect/infect_Model.cpp -o infect/infect_Model.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c infect/infect_Patient.cpp -o infect/infect_Patient.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c infect/infect_PatientState.cpp -o infect/infect_PatientState.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c infect/infect_RawEvent.cpp -o infect/infect_RawEvent.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c infect/infect_Sampler.cpp -o infect/infect_Sampler.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c infect/infect_SetLocationState.cpp -o infect/infect_SetLocationState.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c infect/infect_State.cpp -o infect/infect_State.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c infect/infect_System.cpp -o infect/infect_System.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c infect/infect_SystemEpisodeHistory.cpp -o infect/infect_SystemEpisodeHistory.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c infect/infect_SystemHistory.cpp -o infect/infect_SystemHistory.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c infect/infect_UnitEpisodeHistory.cpp -o infect/infect_UnitEpisodeHistory.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c lognormal/lognormal_LinearAbxICP2.cpp -o lognormal/lognormal_LinearAbxICP2.o
In file included from ./lognormal/../modeling/modeling.h:20,
from ./lognormal/lognormal.h:18,
from lognormal/lognormal_LinearAbxICP2.cpp:1:
./lognormal/../modeling/TestParams.h:54:22: warning: ‘virtual void models::TestParams::set(int, double, int, double, double)’ was hidden [-Woverloaded-virtual=]
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^~~
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:57:22: note: by ‘models::TestParamsAbx::set’
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^~~
./lognormal/../modeling/TestParams.h:26:22: warning: ‘virtual void models::TestParams::set(int, double)’ was hidden [-Woverloaded-virtual=]
26 | virtual void set(int i, double value)
| ^~~
./lognormal/../modeling/TestParamsAbx.h:57:22: note: by ‘models::TestParamsAbx::set’
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^~~
./lognormal/../modeling/TestParams.h:26:22: warning: ‘virtual void models::TestParams::set(int, double)’ was hidden [-Woverloaded-virtual=]
26 | virtual void set(int i, double value)
| ^~~
In file included from ./lognormal/../modeling/modeling.h:23:
./lognormal/../modeling/RandomTestParams.h:57:22: note: by ‘models::RandomTestParams::set’
57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin);
| ^~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c lognormal/lognormal_LinearAbxICP.cpp -o lognormal/lognormal_LinearAbxICP.o
In file included from ./lognormal/../modeling/modeling.h:20,
from ./lognormal/lognormal.h:18,
from lognormal/lognormal_LinearAbxICP.cpp:1:
./lognormal/../modeling/TestParams.h:54:22: warning: ‘virtual void models::TestParams::set(int, double, int, double, double)’ was hidden [-Woverloaded-virtual=]
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^~~
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:57:22: note: by ‘models::TestParamsAbx::set’
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^~~
./lognormal/../modeling/TestParams.h:26:22: warning: ‘virtual void models::TestParams::set(int, double)’ was hidden [-Woverloaded-virtual=]
26 | virtual void set(int i, double value)
| ^~~
./lognormal/../modeling/TestParamsAbx.h:57:22: note: by ‘models::TestParamsAbx::set’
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^~~
./lognormal/../modeling/TestParams.h:26:22: warning: ‘virtual void models::TestParams::set(int, double)’ was hidden [-Woverloaded-virtual=]
26 | virtual void set(int i, double value)
| ^~~
In file included from ./lognormal/../modeling/modeling.h:23:
./lognormal/../modeling/RandomTestParams.h:57:22: note: by ‘models::RandomTestParams::set’
57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin);
| ^~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c lognormal/lognormal_LinearAbxModel2.cpp -o lognormal/lognormal_LinearAbxModel2.o
In file included from ./lognormal/../modeling/modeling.h:20,
from ./lognormal/lognormal.h:18,
from lognormal/lognormal_LinearAbxModel2.cpp:1:
./lognormal/../modeling/TestParams.h:54:22: warning: ‘virtual void models::TestParams::set(int, double, int, double, double)’ was hidden [-Woverloaded-virtual=]
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^~~
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:57:22: note: by ‘models::TestParamsAbx::set’
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^~~
./lognormal/../modeling/TestParams.h:26:22: warning: ‘virtual void models::TestParams::set(int, double)’ was hidden [-Woverloaded-virtual=]
26 | virtual void set(int i, double value)
| ^~~
./lognormal/../modeling/TestParamsAbx.h:57:22: note: by ‘models::TestParamsAbx::set’
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^~~
./lognormal/../modeling/TestParams.h:26:22: warning: ‘virtual void models::TestParams::set(int, double)’ was hidden [-Woverloaded-virtual=]
26 | virtual void set(int i, double value)
| ^~~
In file included from ./lognormal/../modeling/modeling.h:23:
./lognormal/../modeling/RandomTestParams.h:57:22: note: by ‘models::RandomTestParams::set’
57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin);
| ^~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c lognormal/lognormal_LinearAbxModel.cpp -o lognormal/lognormal_LinearAbxModel.o
In file included from ./lognormal/../modeling/modeling.h:20,
from ./lognormal/lognormal.h:18,
from lognormal/lognormal_LinearAbxModel.cpp:1:
./lognormal/../modeling/TestParams.h:54:22: warning: ‘virtual void models::TestParams::set(int, double, int, double, double)’ was hidden [-Woverloaded-virtual=]
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^~~
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:57:22: note: by ‘models::TestParamsAbx::set’
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^~~
./lognormal/../modeling/TestParams.h:26:22: warning: ‘virtual void models::TestParams::set(int, double)’ was hidden [-Woverloaded-virtual=]
26 | virtual void set(int i, double value)
| ^~~
./lognormal/../modeling/TestParamsAbx.h:57:22: note: by ‘models::TestParamsAbx::set’
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^~~
./lognormal/../modeling/TestParams.h:26:22: warning: ‘virtual void models::TestParams::set(int, double)’ was hidden [-Woverloaded-virtual=]
26 | virtual void set(int i, double value)
| ^~~
In file included from ./lognormal/../modeling/modeling.h:23:
./lognormal/../modeling/RandomTestParams.h:57:22: note: by ‘models::RandomTestParams::set’
57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin);
| ^~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c lognormal/lognormal_LogNormalAbxICP.cpp -o lognormal/lognormal_LogNormalAbxICP.o
In file included from ./lognormal/../modeling/modeling.h:20,
from ./lognormal/lognormal.h:18,
from lognormal/lognormal_LogNormalAbxICP.cpp:1:
./lognormal/../modeling/TestParams.h:54:22: warning: ‘virtual void models::TestParams::set(int, double, int, double, double)’ was hidden [-Woverloaded-virtual=]
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^~~
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:57:22: note: by ‘models::TestParamsAbx::set’
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^~~
./lognormal/../modeling/TestParams.h:26:22: warning: ‘virtual void models::TestParams::set(int, double)’ was hidden [-Woverloaded-virtual=]
26 | virtual void set(int i, double value)
| ^~~
./lognormal/../modeling/TestParamsAbx.h:57:22: note: by ‘models::TestParamsAbx::set’
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^~~
./lognormal/../modeling/TestParams.h:26:22: warning: ‘virtual void models::TestParams::set(int, double)’ was hidden [-Woverloaded-virtual=]
26 | virtual void set(int i, double value)
| ^~~
In file included from ./lognormal/../modeling/modeling.h:23:
./lognormal/../modeling/RandomTestParams.h:57:22: note: by ‘models::RandomTestParams::set’
57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin);
| ^~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c lognormal/lognormal_LogNormalICP.cpp -o lognormal/lognormal_LogNormalICP.o
In file included from ./lognormal/../modeling/modeling.h:20,
from ./lognormal/lognormal.h:18,
from lognormal/lognormal_LogNormalICP.cpp:1:
./lognormal/../modeling/TestParams.h:54:22: warning: ‘virtual void models::TestParams::set(int, double, int, double, double)’ was hidden [-Woverloaded-virtual=]
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^~~
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:57:22: note: by ‘models::TestParamsAbx::set’
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^~~
./lognormal/../modeling/TestParams.h:26:22: warning: ‘virtual void models::TestParams::set(int, double)’ was hidden [-Woverloaded-virtual=]
26 | virtual void set(int i, double value)
| ^~~
./lognormal/../modeling/TestParamsAbx.h:57:22: note: by ‘models::TestParamsAbx::set’
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^~~
./lognormal/../modeling/TestParams.h:26:22: warning: ‘virtual void models::TestParams::set(int, double)’ was hidden [-Woverloaded-virtual=]
26 | virtual void set(int i, double value)
| ^~~
In file included from ./lognormal/../modeling/modeling.h:23:
./lognormal/../modeling/RandomTestParams.h:57:22: note: by ‘models::RandomTestParams::set’
57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin);
| ^~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c lognormal/lognormal_LogNormalMassAct.cpp -o lognormal/lognormal_LogNormalMassAct.o
In file included from ./lognormal/../modeling/modeling.h:20,
from ./lognormal/lognormal.h:18,
from lognormal/lognormal_LogNormalMassAct.cpp:1:
./lognormal/../modeling/TestParams.h:54:22: warning: ‘virtual void models::TestParams::set(int, double, int, double, double)’ was hidden [-Woverloaded-virtual=]
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^~~
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:57:22: note: by ‘models::TestParamsAbx::set’
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^~~
./lognormal/../modeling/TestParams.h:26:22: warning: ‘virtual void models::TestParams::set(int, double)’ was hidden [-Woverloaded-virtual=]
26 | virtual void set(int i, double value)
| ^~~
./lognormal/../modeling/TestParamsAbx.h:57:22: note: by ‘models::TestParamsAbx::set’
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^~~
./lognormal/../modeling/TestParams.h:26:22: warning: ‘virtual void models::TestParams::set(int, double)’ was hidden [-Woverloaded-virtual=]
26 | virtual void set(int i, double value)
| ^~~
In file included from ./lognormal/../modeling/modeling.h:23:
./lognormal/../modeling/RandomTestParams.h:57:22: note: by ‘models::RandomTestParams::set’
57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin);
| ^~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c lognormal/lognormal_LogNormalModel.cpp -o lognormal/lognormal_LogNormalModel.o
In file included from ./lognormal/../modeling/modeling.h:20,
from ./lognormal/lognormal.h:18,
from lognormal/lognormal_LogNormalModel.cpp:1:
./lognormal/../modeling/TestParams.h:54:22: warning: ‘virtual void models::TestParams::set(int, double, int, double, double)’ was hidden [-Woverloaded-virtual=]
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^~~
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:57:22: note: by ‘models::TestParamsAbx::set’
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^~~
./lognormal/../modeling/TestParams.h:26:22: warning: ‘virtual void models::TestParams::set(int, double)’ was hidden [-Woverloaded-virtual=]
26 | virtual void set(int i, double value)
| ^~~
./lognormal/../modeling/TestParamsAbx.h:57:22: note: by ‘models::TestParamsAbx::set’
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^~~
./lognormal/../modeling/TestParams.h:26:22: warning: ‘virtual void models::TestParams::set(int, double)’ was hidden [-Woverloaded-virtual=]
26 | virtual void set(int i, double value)
| ^~~
In file included from ./lognormal/../modeling/modeling.h:23:
./lognormal/../modeling/RandomTestParams.h:57:22: note: by ‘models::RandomTestParams::set’
57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin);
| ^~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c lognormal/lognormal_MixedICP.cpp -o lognormal/lognormal_MixedICP.o
In file included from ./lognormal/../modeling/modeling.h:20,
from ./lognormal/lognormal.h:18,
from lognormal/lognormal_MixedICP.cpp:1:
./lognormal/../modeling/TestParams.h:54:22: warning: ‘virtual void models::TestParams::set(int, double, int, double, double)’ was hidden [-Woverloaded-virtual=]
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^~~
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:57:22: note: by ‘models::TestParamsAbx::set’
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^~~
./lognormal/../modeling/TestParams.h:26:22: warning: ‘virtual void models::TestParams::set(int, double)’ was hidden [-Woverloaded-virtual=]
26 | virtual void set(int i, double value)
| ^~~
./lognormal/../modeling/TestParamsAbx.h:57:22: note: by ‘models::TestParamsAbx::set’
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^~~
./lognormal/../modeling/TestParams.h:26:22: warning: ‘virtual void models::TestParams::set(int, double)’ was hidden [-Woverloaded-virtual=]
26 | virtual void set(int i, double value)
| ^~~
In file included from ./lognormal/../modeling/modeling.h:23:
./lognormal/../modeling/RandomTestParams.h:57:22: note: by ‘models::RandomTestParams::set’
57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin);
| ^~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c lognormal/lognormal_MultiUnitAbxICP.cpp -o lognormal/lognormal_MultiUnitAbxICP.o
In file included from ./lognormal/../modeling/modeling.h:20,
from ./lognormal/lognormal.h:18,
from lognormal/lognormal_MultiUnitAbxICP.cpp:1:
./lognormal/../modeling/TestParams.h:54:22: warning: ‘virtual void models::TestParams::set(int, double, int, double, double)’ was hidden [-Woverloaded-virtual=]
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^~~
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:57:22: note: by ‘models::TestParamsAbx::set’
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^~~
./lognormal/../modeling/TestParams.h:26:22: warning: ‘virtual void models::TestParams::set(int, double)’ was hidden [-Woverloaded-virtual=]
26 | virtual void set(int i, double value)
| ^~~
./lognormal/../modeling/TestParamsAbx.h:57:22: note: by ‘models::TestParamsAbx::set’
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^~~
./lognormal/../modeling/TestParams.h:26:22: warning: ‘virtual void models::TestParams::set(int, double)’ was hidden [-Woverloaded-virtual=]
26 | virtual void set(int i, double value)
| ^~~
In file included from ./lognormal/../modeling/modeling.h:23:
./lognormal/../modeling/RandomTestParams.h:57:22: note: by ‘models::RandomTestParams::set’
57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin);
| ^~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Markov.cpp -o Markov.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c modeling/modeling_Parameters.cpp -o modeling/modeling_Parameters.o
In file included from ./modeling/modeling.h:20,
from modeling/modeling_Parameters.cpp:1:
./modeling/TestParams.h:54:22: warning: ‘virtual void models::TestParams::set(int, double, int, double, double)’ was hidden [-Woverloaded-virtual=]
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^~~
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:57:22: note: by ‘models::TestParamsAbx::set’
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^~~
./modeling/TestParams.h:26:22: warning: ‘virtual void models::TestParams::set(int, double)’ was hidden [-Woverloaded-virtual=]
26 | virtual void set(int i, double value)
| ^~~
./modeling/TestParamsAbx.h:57:22: note: by ‘models::TestParamsAbx::set’
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^~~
./modeling/TestParams.h:26:22: warning: ‘virtual void models::TestParams::set(int, double)’ was hidden [-Woverloaded-virtual=]
26 | virtual void set(int i, double value)
| ^~~
In file included from ./modeling/modeling.h:23:
./modeling/RandomTestParams.h:57:22: note: by ‘models::RandomTestParams::set’
57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin);
| ^~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c modeling/modeling_TestParams.cpp -o modeling/modeling_TestParams.o
In file included from ./modeling/modeling.h:20,
from modeling/modeling_TestParams.cpp:1:
./modeling/TestParams.h:54:22: warning: ‘virtual void models::TestParams::set(int, double, int, double, double)’ was hidden [-Woverloaded-virtual=]
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^~~
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:57:22: note: by ‘models::TestParamsAbx::set’
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^~~
./modeling/TestParams.h:26:22: warning: ‘virtual void models::TestParams::set(int, double)’ was hidden [-Woverloaded-virtual=]
26 | virtual void set(int i, double value)
| ^~~
./modeling/TestParamsAbx.h:57:22: note: by ‘models::TestParamsAbx::set’
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^~~
./modeling/TestParams.h:26:22: warning: ‘virtual void models::TestParams::set(int, double)’ was hidden [-Woverloaded-virtual=]
26 | virtual void set(int i, double value)
| ^~~
In file included from ./modeling/modeling.h:23:
./modeling/RandomTestParams.h:57:22: note: by ‘models::RandomTestParams::set’
57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin);
| ^~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c modeling/models_AbxParams.cpp -o modeling/models_AbxParams.o
In file included from ./modeling/modeling.h:20,
from modeling/models_AbxParams.cpp:1:
./modeling/TestParams.h:54:22: warning: ‘virtual void models::TestParams::set(int, double, int, double, double)’ was hidden [-Woverloaded-virtual=]
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^~~
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:57:22: note: by ‘models::TestParamsAbx::set’
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^~~
./modeling/TestParams.h:26:22: warning: ‘virtual void models::TestParams::set(int, double)’ was hidden [-Woverloaded-virtual=]
26 | virtual void set(int i, double value)
| ^~~
./modeling/TestParamsAbx.h:57:22: note: by ‘models::TestParamsAbx::set’
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^~~
./modeling/TestParams.h:26:22: warning: ‘virtual void models::TestParams::set(int, double)’ was hidden [-Woverloaded-virtual=]
26 | virtual void set(int i, double value)
| ^~~
In file included from ./modeling/modeling.h:23:
./modeling/RandomTestParams.h:57:22: note: by ‘models::RandomTestParams::set’
57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin);
| ^~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c modeling/models_ConstrainedSimulator.cpp -o modeling/models_ConstrainedSimulator.o
In file included from ./modeling/modeling.h:20,
from modeling/models_ConstrainedSimulator.cpp:1:
./modeling/TestParams.h:54:22: warning: ‘virtual void models::TestParams::set(int, double, int, double, double)’ was hidden [-Woverloaded-virtual=]
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^~~
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:57:22: note: by ‘models::TestParamsAbx::set’
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^~~
./modeling/TestParams.h:26:22: warning: ‘virtual void models::TestParams::set(int, double)’ was hidden [-Woverloaded-virtual=]
26 | virtual void set(int i, double value)
| ^~~
./modeling/TestParamsAbx.h:57:22: note: by ‘models::TestParamsAbx::set’
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^~~
./modeling/TestParams.h:26:22: warning: ‘virtual void models::TestParams::set(int, double)’ was hidden [-Woverloaded-virtual=]
26 | virtual void set(int i, double value)
| ^~~
In file included from ./modeling/modeling.h:23:
./modeling/RandomTestParams.h:57:22: note: by ‘models::RandomTestParams::set’
57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin);
| ^~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c modeling/models_DummyModel.cpp -o modeling/models_DummyModel.o
In file included from ./modeling/modeling.h:20,
from modeling/models_DummyModel.cpp:1:
./modeling/TestParams.h:54:22: warning: ‘virtual void models::TestParams::set(int, double, int, double, double)’ was hidden [-Woverloaded-virtual=]
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^~~
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:57:22: note: by ‘models::TestParamsAbx::set’
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^~~
./modeling/TestParams.h:26:22: warning: ‘virtual void models::TestParams::set(int, double)’ was hidden [-Woverloaded-virtual=]
26 | virtual void set(int i, double value)
| ^~~
./modeling/TestParamsAbx.h:57:22: note: by ‘models::TestParamsAbx::set’
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^~~
./modeling/TestParams.h:26:22: warning: ‘virtual void models::TestParams::set(int, double)’ was hidden [-Woverloaded-virtual=]
26 | virtual void set(int i, double value)
| ^~~
In file included from ./modeling/modeling.h:23:
./modeling/RandomTestParams.h:57:22: note: by ‘models::RandomTestParams::set’
57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin);
| ^~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c modeling/models_ForwardSimulator.cpp -o modeling/models_ForwardSimulator.o
In file included from ./modeling/modeling.h:20,
from modeling/models_ForwardSimulator.cpp:1:
./modeling/TestParams.h:54:22: warning: ‘virtual void models::TestParams::set(int, double, int, double, double)’ was hidden [-Woverloaded-virtual=]
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^~~
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:57:22: note: by ‘models::TestParamsAbx::set’
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^~~
./modeling/TestParams.h:26:22: warning: ‘virtual void models::TestParams::set(int, double)’ was hidden [-Woverloaded-virtual=]
26 | virtual void set(int i, double value)
| ^~~
./modeling/TestParamsAbx.h:57:22: note: by ‘models::TestParamsAbx::set’
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^~~
./modeling/TestParams.h:26:22: warning: ‘virtual void models::TestParams::set(int, double)’ was hidden [-Woverloaded-virtual=]
26 | virtual void set(int i, double value)
| ^~~
In file included from ./modeling/modeling.h:23:
./modeling/RandomTestParams.h:57:22: note: by ‘models::RandomTestParams::set’
57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin);
| ^~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c modeling/models_InsituParams.cpp -o modeling/models_InsituParams.o
In file included from ./modeling/modeling.h:20,
from modeling/models_InsituParams.cpp:1:
./modeling/TestParams.h:54:22: warning: ‘virtual void models::TestParams::set(int, double, int, double, double)’ was hidden [-Woverloaded-virtual=]
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^~~
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:57:22: note: by ‘models::TestParamsAbx::set’
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^~~
./modeling/TestParams.h:26:22: warning: ‘virtual void models::TestParams::set(int, double)’ was hidden [-Woverloaded-virtual=]
26 | virtual void set(int i, double value)
| ^~~
./modeling/TestParamsAbx.h:57:22: note: by ‘models::TestParamsAbx::set’
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^~~
./modeling/TestParams.h:26:22: warning: ‘virtual void models::TestParams::set(int, double)’ was hidden [-Woverloaded-virtual=]
26 | virtual void set(int i, double value)
| ^~~
In file included from ./modeling/modeling.h:23:
./modeling/RandomTestParams.h:57:22: note: by ‘models::RandomTestParams::set’
57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin);
| ^~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c modeling/models_MassActionICP.cpp -o modeling/models_MassActionICP.o
In file included from ./modeling/modeling.h:20,
from modeling/models_MassActionICP.cpp:1:
./modeling/TestParams.h:54:22: warning: ‘virtual void models::TestParams::set(int, double, int, double, double)’ was hidden [-Woverloaded-virtual=]
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^~~
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:57:22: note: by ‘models::TestParamsAbx::set’
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^~~
./modeling/TestParams.h:26:22: warning: ‘virtual void models::TestParams::set(int, double)’ was hidden [-Woverloaded-virtual=]
26 | virtual void set(int i, double value)
| ^~~
./modeling/TestParamsAbx.h:57:22: note: by ‘models::TestParamsAbx::set’
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^~~
./modeling/TestParams.h:26:22: warning: ‘virtual void models::TestParams::set(int, double)’ was hidden [-Woverloaded-virtual=]
26 | virtual void set(int i, double value)
| ^~~
In file included from ./modeling/modeling.h:23:
./modeling/RandomTestParams.h:57:22: note: by ‘models::RandomTestParams::set’
57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin);
| ^~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c modeling/models_MassActionModel.cpp -o modeling/models_MassActionModel.o
In file included from ./modeling/modeling.h:20,
from modeling/models_MassActionModel.cpp:1:
./modeling/TestParams.h:54:22: warning: ‘virtual void models::TestParams::set(int, double, int, double, double)’ was hidden [-Woverloaded-virtual=]
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^~~
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:57:22: note: by ‘models::TestParamsAbx::set’
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^~~
./modeling/TestParams.h:26:22: warning: ‘virtual void models::TestParams::set(int, double)’ was hidden [-Woverloaded-virtual=]
26 | virtual void set(int i, double value)
| ^~~
./modeling/TestParamsAbx.h:57:22: note: by ‘models::TestParamsAbx::set’
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^~~
./modeling/TestParams.h:26:22: warning: ‘virtual void models::TestParams::set(int, double)’ was hidden [-Woverloaded-virtual=]
26 | virtual void set(int i, double value)
| ^~~
In file included from ./modeling/modeling.h:23:
./modeling/RandomTestParams.h:57:22: note: by ‘models::RandomTestParams::set’
57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin);
| ^~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c modeling/models_Options.cpp -o modeling/models_Options.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c modeling/models_OutColParams.cpp -o modeling/models_OutColParams.o
In file included from ./modeling/modeling.h:20,
from modeling/models_OutColParams.cpp:1:
./modeling/TestParams.h:54:22: warning: ‘virtual void models::TestParams::set(int, double, int, double, double)’ was hidden [-Woverloaded-virtual=]
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^~~
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:57:22: note: by ‘models::TestParamsAbx::set’
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^~~
./modeling/TestParams.h:26:22: warning: ‘virtual void models::TestParams::set(int, double)’ was hidden [-Woverloaded-virtual=]
26 | virtual void set(int i, double value)
| ^~~
./modeling/TestParamsAbx.h:57:22: note: by ‘models::TestParamsAbx::set’
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^~~
./modeling/TestParams.h:26:22: warning: ‘virtual void models::TestParams::set(int, double)’ was hidden [-Woverloaded-virtual=]
26 | virtual void set(int i, double value)
| ^~~
In file included from ./modeling/modeling.h:23:
./modeling/RandomTestParams.h:57:22: note: by ‘models::RandomTestParams::set’
57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin);
| ^~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c modeling/models_RandomTestParams.cpp -o modeling/models_RandomTestParams.o
In file included from ./modeling/modeling.h:20,
from modeling/models_RandomTestParams.cpp:1:
./modeling/TestParams.h:54:22: warning: ‘virtual void models::TestParams::set(int, double, int, double, double)’ was hidden [-Woverloaded-virtual=]
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^~~
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:57:22: note: by ‘models::TestParamsAbx::set’
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^~~
./modeling/TestParams.h:26:22: warning: ‘virtual void models::TestParams::set(int, double)’ was hidden [-Woverloaded-virtual=]
26 | virtual void set(int i, double value)
| ^~~
./modeling/TestParamsAbx.h:57:22: note: by ‘models::TestParamsAbx::set’
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^~~
./modeling/TestParams.h:26:22: warning: ‘virtual void models::TestParams::set(int, double)’ was hidden [-Woverloaded-virtual=]
26 | virtual void set(int i, double value)
| ^~~
In file included from ./modeling/modeling.h:23:
./modeling/RandomTestParams.h:57:22: note: by ‘models::RandomTestParams::set’
57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin);
| ^~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c modeling/models_TestParamsAbx.cpp -o modeling/models_TestParamsAbx.o
In file included from ./modeling/modeling.h:20,
from modeling/models_TestParamsAbx.cpp:1:
./modeling/TestParams.h:54:22: warning: ‘virtual void models::TestParams::set(int, double, int, double, double)’ was hidden [-Woverloaded-virtual=]
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^~~
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:57:22: note: by ‘models::TestParamsAbx::set’
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^~~
./modeling/TestParams.h:26:22: warning: ‘virtual void models::TestParams::set(int, double)’ was hidden [-Woverloaded-virtual=]
26 | virtual void set(int i, double value)
| ^~~
./modeling/TestParamsAbx.h:57:22: note: by ‘models::TestParamsAbx::set’
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^~~
./modeling/TestParams.h:26:22: warning: ‘virtual void models::TestParams::set(int, double)’ was hidden [-Woverloaded-virtual=]
26 | virtual void set(int i, double value)
| ^~~
In file included from ./modeling/modeling.h:23:
./modeling/RandomTestParams.h:57:22: note: by ‘models::RandomTestParams::set’
57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin);
| ^~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c modeling/models_UnitLinkedModel.cpp -o modeling/models_UnitLinkedModel.o
In file included from ./modeling/modeling.h:20,
from modeling/models_UnitLinkedModel.cpp:1:
./modeling/TestParams.h:54:22: warning: ‘virtual void models::TestParams::set(int, double, int, double, double)’ was hidden [-Woverloaded-virtual=]
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^~~
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:57:22: note: by ‘models::TestParamsAbx::set’
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^~~
./modeling/TestParams.h:26:22: warning: ‘virtual void models::TestParams::set(int, double)’ was hidden [-Woverloaded-virtual=]
26 | virtual void set(int i, double value)
| ^~~
./modeling/TestParamsAbx.h:57:22: note: by ‘models::TestParamsAbx::set’
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^~~
./modeling/TestParams.h:26:22: warning: ‘virtual void models::TestParams::set(int, double)’ was hidden [-Woverloaded-virtual=]
26 | virtual void set(int i, double value)
| ^~~
In file included from ./modeling/modeling.h:23:
./modeling/RandomTestParams.h:57:22: note: by ‘models::RandomTestParams::set’
57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin);
| ^~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Module.cpp -o Module.o
In file included from lognormal/../modeling/modeling.h:20,
from lognormal/lognormal.h:18,
from Module.cpp:4:
lognormal/../modeling/TestParams.h:54:22: warning: ‘virtual void models::TestParams::set(int, double, int, double, double)’ was hidden [-Woverloaded-virtual=]
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^~~
In file included from lognormal/../modeling/modeling.h:21:
lognormal/../modeling/TestParamsAbx.h:57:22: note: by ‘models::TestParamsAbx::set’
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^~~
lognormal/../modeling/TestParams.h:26:22: warning: ‘virtual void models::TestParams::set(int, double)’ was hidden [-Woverloaded-virtual=]
26 | virtual void set(int i, double value)
| ^~~
lognormal/../modeling/TestParamsAbx.h:57:22: note: by ‘models::TestParamsAbx::set’
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^~~
lognormal/../modeling/TestParams.h:26:22: warning: ‘virtual void models::TestParams::set(int, double)’ was hidden [-Woverloaded-virtual=]
26 | virtual void set(int i, double value)
| ^~~
In file included from lognormal/../modeling/modeling.h:23:
lognormal/../modeling/RandomTestParams.h:57:22: note: by ‘models::RandomTestParams::set’
57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin);
| ^~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Module-Infect.cpp -o Module-Infect.o
In file included from modeling/modeling.h:20,
from wrap.h:9,
from Module-Infect.cpp:4:
modeling/TestParams.h:54:22: warning: ‘virtual void models::TestParams::set(int, double, int, double, double)’ was hidden [-Woverloaded-virtual=]
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^~~
In file included from modeling/modeling.h:21:
modeling/TestParamsAbx.h:57:22: note: by ‘models::TestParamsAbx::set’
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^~~
modeling/TestParams.h:26:22: warning: ‘virtual void models::TestParams::set(int, double)’ was hidden [-Woverloaded-virtual=]
26 | virtual void set(int i, double value)
| ^~~
modeling/TestParamsAbx.h:57:22: note: by ‘models::TestParamsAbx::set’
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^~~
modeling/TestParams.h:26:22: warning: ‘virtual void models::TestParams::set(int, double)’ was hidden [-Woverloaded-virtual=]
26 | virtual void set(int i, double value)
| ^~~
In file included from modeling/modeling.h:23:
modeling/RandomTestParams.h:57:22: note: by ‘models::RandomTestParams::set’
57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin);
| ^~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Module-Infect-System.cpp -o Module-Infect-System.o
In file included from modeling/modeling.h:20,
from wrap.h:9,
from Module-Infect-System.cpp:4:
modeling/TestParams.h:54:22: warning: ‘virtual void models::TestParams::set(int, double, int, double, double)’ was hidden [-Woverloaded-virtual=]
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^~~
In file included from modeling/modeling.h:21:
modeling/TestParamsAbx.h:57:22: note: by ‘models::TestParamsAbx::set’
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^~~
modeling/TestParams.h:26:22: warning: ‘virtual void models::TestParams::set(int, double)’ was hidden [-Woverloaded-virtual=]
26 | virtual void set(int i, double value)
| ^~~
modeling/TestParamsAbx.h:57:22: note: by ‘models::TestParamsAbx::set’
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^~~
modeling/TestParams.h:26:22: warning: ‘virtual void models::TestParams::set(int, double)’ was hidden [-Woverloaded-virtual=]
26 | virtual void set(int i, double value)
| ^~~
In file included from modeling/modeling.h:23:
modeling/RandomTestParams.h:57:22: note: by ‘models::RandomTestParams::set’
57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin);
| ^~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Module-lognormal.cpp -o Module-lognormal.o
In file included from lognormal/../modeling/modeling.h:20,
from lognormal/lognormal.h:18,
from Module-lognormal.cpp:2:
lognormal/../modeling/TestParams.h:54:22: warning: ‘virtual void models::TestParams::set(int, double, int, double, double)’ was hidden [-Woverloaded-virtual=]
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^~~
In file included from lognormal/../modeling/modeling.h:21:
lognormal/../modeling/TestParamsAbx.h:57:22: note: by ‘models::TestParamsAbx::set’
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^~~
lognormal/../modeling/TestParams.h:26:22: warning: ‘virtual void models::TestParams::set(int, double)’ was hidden [-Woverloaded-virtual=]
26 | virtual void set(int i, double value)
| ^~~
lognormal/../modeling/TestParamsAbx.h:57:22: note: by ‘models::TestParamsAbx::set’
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^~~
lognormal/../modeling/TestParams.h:26:22: warning: ‘virtual void models::TestParams::set(int, double)’ was hidden [-Woverloaded-virtual=]
26 | virtual void set(int i, double value)
| ^~~
In file included from lognormal/../modeling/modeling.h:23:
lognormal/../modeling/RandomTestParams.h:57:22: note: by ‘models::RandomTestParams::set’
57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin);
| ^~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Module-models.cpp -o Module-models.o
In file included from modeling/modeling.h:20,
from Module-models.cpp:2:
modeling/TestParams.h:54:22: warning: ‘virtual void models::TestParams::set(int, double, int, double, double)’ was hidden [-Woverloaded-virtual=]
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^~~
In file included from modeling/modeling.h:21:
modeling/TestParamsAbx.h:57:22: note: by ‘models::TestParamsAbx::set’
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^~~
modeling/TestParams.h:26:22: warning: ‘virtual void models::TestParams::set(int, double)’ was hidden [-Woverloaded-virtual=]
26 | virtual void set(int i, double value)
| ^~~
modeling/TestParamsAbx.h:57:22: note: by ‘models::TestParamsAbx::set’
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^~~
modeling/TestParams.h:26:22: warning: ‘virtual void models::TestParams::set(int, double)’ was hidden [-Woverloaded-virtual=]
26 | virtual void set(int i, double value)
| ^~~
In file included from modeling/modeling.h:23:
modeling/RandomTestParams.h:57:22: note: by ‘models::RandomTestParams::set’
57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin);
| ^~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Module-utils.cpp -o Module-utils.o
In file included from modeling/modeling.h:20,
from Module-utils.cpp:2:
modeling/TestParams.h:54:22: warning: ‘virtual void models::TestParams::set(int, double, int, double, double)’ was hidden [-Woverloaded-virtual=]
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^~~
In file included from modeling/modeling.h:21:
modeling/TestParamsAbx.h:57:22: note: by ‘models::TestParamsAbx::set’
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^~~
modeling/TestParams.h:26:22: warning: ‘virtual void models::TestParams::set(int, double)’ was hidden [-Woverloaded-virtual=]
26 | virtual void set(int i, double value)
| ^~~
modeling/TestParamsAbx.h:57:22: note: by ‘models::TestParamsAbx::set’
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^~~
modeling/TestParams.h:26:22: warning: ‘virtual void models::TestParams::set(int, double)’ was hidden [-Woverloaded-virtual=]
26 | virtual void set(int i, double value)
| ^~~
In file included from modeling/modeling.h:23:
modeling/RandomTestParams.h:57:22: note: by ‘models::RandomTestParams::set’
57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin);
| ^~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Random.cpp -o Random.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RRandom.cpp -o RRandom.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c runMCMC.cpp -o runMCMC.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c util/util.cc -o util/util.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c util/util_Integer.cpp -o util/util_Integer.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c util/util_List.cpp -o util/util_List.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c util/util_Object.cpp -o util/util_Object.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c util/util_Vector.cpp -o util/util_Vector.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c wrap.cpp -o wrap.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o bayestransmission.so CodeToEvent.o infect/infect_AbxCoding.o infect/infect_AbxLocationState.o infect/infect_AbxPatientState.o infect/infect_CountLocationState.o infect/infect_Episode.o infect/infect_EpisodeHistory.o infect/infect_Event.o infect/infect_Facility.o infect/infect_HistoryLink.o infect/infect_LocationState.o infect/infect_Model.o infect/infect_Patient.o infect/infect_PatientState.o infect/infect_RawEvent.o infect/infect_Sampler.o infect/infect_SetLocationState.o infect/infect_State.o infect/infect_System.o infect/infect_SystemEpisodeHistory.o infect/infect_SystemHistory.o infect/infect_UnitEpisodeHistory.o lognormal/lognormal_LinearAbxICP2.o lognormal/lognormal_LinearAbxICP.o lognormal/lognormal_LinearAbxModel2.o lognormal/lognormal_LinearAbxModel.o lognormal/lognormal_LogNormalAbxICP.o lognormal/lognormal_LogNormalICP.o lognormal/lognormal_LogNormalMassAct.o lognormal/lognormal_LogNormalModel.o lognormal/lognormal_MixedICP.o lognormal/lognormal_MultiUnitAbxICP.o Markov.o modeling/modeling_Parameters.o modeling/modeling_TestParams.o modeling/models_AbxParams.o modeling/models_ConstrainedSimulator.o modeling/models_DummyModel.o modeling/models_ForwardSimulator.o modeling/models_InsituParams.o modeling/models_MassActionICP.o modeling/models_MassActionModel.o modeling/models_Options.o modeling/models_OutColParams.o modeling/models_RandomTestParams.o modeling/models_TestParamsAbx.o modeling/models_UnitLinkedModel.o Module.o Module-Infect.o Module-Infect-System.o Module-lognormal.o Module-models.o Module-utils.o Random.o RcppExports.o RRandom.o runMCMC.o util/util.o util/util_Integer.o util/util_List.o util/util_Object.o util/util_Vector.o wrap.o -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -lstdc++ -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmphUmptI/R.INSTALL3657768ae5f81/bayestransmission/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmphUmptI/R.INSTALL3657768ae5f81/bayestransmission/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmphUmptI/R.INSTALL3657768ae5f81/bayestransmission/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-bayestransmission/00new/bayestransmission/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘bayestransmission’
finding HTML links ... done
AbxParams html
AbxRateParams html
ClearanceParams html
CodeToEvent html
EventToCode html
InUnitParams html
InsituParams html
LinearAbxAcquisitionParams html
LogNormalAcquisitionParams html
LogNormalModelParams html
OutOfUnitInfectionParams html
Param html
ParamWRate html
ProgressionParams html
RandomTestParams html
SurveillanceTestParams html
getCppModelParams html
getExposureFlags html
mcmc_to_dataframe html
newCppModel html
newModelExport html
runMCMC html
simulated.data html
simulated.data_sorted html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bayestransmission)