* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘bayesCureRateModel’ ...
** this is package ‘bayesCureRateModel’ version ‘1.5’
** package ‘bayesCureRateModel’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.3.0-10) 14.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpixogkd/R.INSTALL16a7b61065cff3/bayesCureRateModel/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c cll_reparameterization_fix.cpp -o cll_reparameterization_fix.o
cll_reparameterization_fix.cpp: In function ‘Rcpp::List complete_log_likelihood_general(arma::vec, arma::mat, Rcpp::IntegerVector, double, double, arma::vec, arma::vec, arma::vec, Rcpp::IntegerVector, double)’:
cll_reparameterization_fix.cpp:33:16: warning: unused variable ‘j’ [-Wunused-variable]
   33 |         int i, j, k, n = X.n_rows, nstiles = X.n_cols;
      |                ^
cll_reparameterization_fix.cpp:33:19: warning: unused variable ‘k’ [-Wunused-variable]
   33 |         int i, j, k, n = X.n_rows, nstiles = X.n_cols;
      |                   ^
cll_reparameterization_fix.cpp:33:36: warning: unused variable ‘nstiles’ [-Wunused-variable]
   33 |         int i, j, k, n = X.n_rows, nstiles = X.n_cols;
      |                                    ^~~~~~~
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o bayesCureRateModel.so RcppExports.o cll_reparameterization_fix.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpixogkd/R.INSTALL16a7b61065cff3/bayesCureRateModel/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpixogkd/R.INSTALL16a7b61065cff3/bayesCureRateModel/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpixogkd/R.INSTALL16a7b61065cff3/bayesCureRateModel/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-bayesCureRateModel/00new/bayesCureRateModel/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘bayesCureRateModel’
    finding HTML links ... done
    Surv                                    html  
    bayesCureRateModel-package              html  
    complete_log_likelihood_general         html  
    compute_fdr_tpr                         html  
    cure_rate_MC3                           html  
    cure_rate_mcmc                          html  
    logLik.bayesCureModel                   html  
    log_dagum                               html  
    log_gamma                               html  
    log_gamma_mixture                       html  
    log_gompertz                            html  
    log_logLogistic                         html  
    log_lomax                               html  
    log_user_mixture                        html  
    log_weibull                             html  
    marriage_dataset                        html  
    plot.bayesCureModel                     html  
    plot.predict_bayesCureModel             html  
    predict.bayesCureModel                  html  
    print.bayesCureModel                    html  
    print.predict_bayesCureModel            html  
    print.summary_bayesCureModel            html  
    residuals.bayesCureModel                html  
    sim_mix_data                            html  
    summary.bayesCureModel                  html  
    summary.predict_bayesCureModel          html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bayesCureRateModel)