* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘batchtools’ ...
** package ‘batchtools’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’
make[1]: Entering directory '/tmp/RtmpItoDRI/R.INSTALL3109e05d83d7ab/batchtools/src'
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c binpack.c -o binpack.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c count_not_missing.c -o count_not_missing.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c fill_gaps.c -o fill_gaps.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c init.c -o init.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c lpt.c -o lpt.o
gcc-13 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o batchtools.so binpack.o count_not_missing.o fill_gaps.o init.o lpt.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpItoDRI/R.INSTALL3109e05d83d7ab/batchtools/src'
make[1]: Entering directory '/tmp/RtmpItoDRI/R.INSTALL3109e05d83d7ab/batchtools/src'
make[1]: Leaving directory '/tmp/RtmpItoDRI/R.INSTALL3109e05d83d7ab/batchtools/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-batchtools/00new/batchtools/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘batchtools’
    finding HTML links ... done
    JobCollection                           html  
    JobExperiment                           html  
    JobNames                                html  
    JoinTables                              html  
    finding level-2 HTML links ... done

    Tags                                    html  
    Worker                                  html  
    addAlgorithm                            html  
    addExperiments                          html  
    addProblem                              html  
    assertRegistry                          html  
    batchExport                             html  
    batchMap                                html  
    batchMapResults                         html  
    batchReduce                             html  
    batchtools-package                      html  
    btlapply                                html  
    cfBrewTemplate                          html  
    cfHandleUnknownSubmitError              html  
    cfKillJob                               html  
    cfReadBrewTemplate                      html  
    chunk                                   html  
    clearRegistry                           html  
    doJobCollection                         html  
    estimateRuntimes                        html  
    execJob                                 html  
    findConfFile                            html  
    findJobs                                html  
    findTemplateFile                        html  
    getDefaultRegistry                      html  
    getErrorMessages                        html  
    getJobTable                             html  
    getStatus                               html  
    grepLogs                                html  
    killJobs                                html  
    loadRegistry                            html  
    loadResult                              html  
    makeClusterFunctions                    html  
    makeClusterFunctionsDocker              html  
    makeClusterFunctionsInteractive         html  
    makeClusterFunctionsLSF                 html  
    makeClusterFunctionsMulticore           html  
    makeClusterFunctionsOpenLava            html  
    makeClusterFunctionsSGE                 html  
    makeClusterFunctionsSSH                 html  
    makeClusterFunctionsSlurm               html  
    makeClusterFunctionsSocket              html  
    makeClusterFunctionsTORQUE              html  
    makeExperimentRegistry                  html  
    makeRegistry                            html  
    makeSubmitJobResult                     html  
    reduceResults                           html  
    reduceResultsList                       html  
    removeExperiments                       html  
    removeRegistry                          html  
    resetJobs                               html  
    runHook                                 html  
    runOSCommand                            html  
    saveRegistry                            html  
    showLog                                 html  
    submitJobs                              html  
    summarizeExperiments                    html  
    sweepRegistry                           html  
    syncRegistry                            html  
    testJob                                 html  
    unwrap                                  html  
    waitForJobs                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (batchtools)